Novel tools for visualizing and exploring intermolecular interactions in molecular crystals

JJ McKinnon, MA Spackman, AS Mitchell - Structural Science, 2004‏ - journals.iucr.org
A new way of exploring packing modes and intermolecular interactions in molecular crystals
is described, using Hirshfeld surfaces to partition crystal space. These molecular Hirshfeld …

The development of gyrification in childhood and adolescence

T White, S Su, M Schmidt, CY Kao, G Sapiro - Brain and cognition, 2010‏ - Elsevier
Gyrification is the process by which the brain undergoes changes in surface morphology to
create sulcal and gyral regions. The period of greatest development of brain gyrification is …

Probing the 3d awareness of visual foundation models

M El Banani, A Raj, KK Maninis, A Kar… - Proceedings of the …, 2024‏ - openaccess.thecvf.com
Recent advances in large-scale pretraining have yielded visual foundation models with
strong capabilities. Not only can recent models generalize to arbitrary images for their …

De novo design of protein interactions with learned surface fingerprints

P Gainza, S Wehrle, A Van Hall-Beauvais, A Marchand… - Nature, 2023‏ - nature.com
Physical interactions between proteins are essential for most biological processes
governing life. However, the molecular determinants of such interactions have been …

CrystalExplorer: a program for Hirshfeld surface analysis, visualization and quantitative analysis of molecular crystals

PR Spackman, MJ Turner, JJ McKinnon… - Applied …, 2021‏ - journals.iucr.org
CrystalExplorer is a native cross-platform program supported on Windows, MacOS and
Linux with the primary function of visualization and investigation of molecular crystal …

Deciphering interaction fingerprints from protein molecular surfaces using geometric deep learning

P Gainza, F Sverrisson, F Monti, E Rodola, D Boscaini… - Nature …, 2020‏ - nature.com
Predicting interactions between proteins and other biomolecules solely based on structure
remains a challenge in biology. A high-level representation of protein structure, the …

Texture feature extraction methods: A survey

A Humeau-Heurtier - IEEE access, 2019‏ - ieeexplore.ieee.org
Texture analysis is used in a very broad range of fields and applications, from texture
classification (eg, for remote sensing) to segmentation (eg, in biomedical imaging), passing …

A comprehensive performance evaluation of 3D local feature descriptors

Y Guo, M Bennamoun, F Sohel, M Lu, J Wan… - International journal of …, 2016‏ - Springer
A number of 3D local feature descriptors have been proposed in the literature. It is however,
unclear which descriptors are more appropriate for a particular application. A good …

[HTML][HTML] In situ architecture and cellular interactions of PolyQ inclusions

FJB Bäuerlein, I Saha, A Mishra, M Kalemanov… - Cell, 2017‏ - cell.com
Expression of many disease-related aggregation-prone proteins results in cytotoxicity and
the formation of large intracellular inclusion bodies. To gain insight into the role of inclusions …

Cell wall synthesis and remodelling dynamics determine division site architecture and cell shape in Escherichia coli

PP Navarro, A Vettiger, VY Ananda, PM Llopis… - Nature …, 2022‏ - nature.com
The bacterial division apparatus catalyses the synthesis and remodelling of septal
peptidoglycan (sPG) to build the cell wall layer that fortifies the daughter cell poles …