An overview of biomedical entity linking throughout the years

E French, BT McInnes - Journal of biomedical informatics, 2023 - Elsevier
Abstract Biomedical Entity Linking (BEL) is the task of map** of spans of text within
biomedical documents to normalized, unique identifiers within an ontology. This is an …

Augmented non-hallucinating large language models as medical information curators

S Gilbert, JN Kather, A Hogan - NPJ digital medicine, 2024 - nature.com
Reliably processing and interlinking medical information has been recognized as a critical
foundation to the digital transformation of medical workflows, and despite the development …

[PDF][PDF] CLinkaRT at EVALITA 2023: Overview of the Task on Linking a Lab Result to its Test Event in the Clinical Domain.

B Altuna, G Karunakaran, A Lavelli, B Magnini… - EVALITA, 2023 - ixa.ehu.eus
CLinkaRT at EVALITA 2023 is a relation extraction task based on clinical cases taken from
the E3C corpus, ie Italian written documents reporting statements of a clinical practice. The …

[HTML][HTML] Early prediction of cardiac arrest in the intensive care unit using explainable machine learning: retrospective study

YK Kim, WD Seo, SJ Lee, JH Koo, GC Kim… - Journal of Medical …, 2024 - jmir.org
Background Cardiac arrest (CA) is one of the leading causes of death among patients in the
intensive care unit (ICU). Although many CA prediction models with high sensitivity have …

[HTML][HTML] A simple neural vector space model for medical concept normalization using concept embeddings

D Xu, T Miller - Journal of biomedical informatics, 2022 - Elsevier
Objective Medical concept normalization (MCN), the task of linking textual mentions to
concepts in an ontology, provides a solution to unify different ways of referring to the same …

Improving broad-coverage medical entity linking with semantic type prediction and large-scale datasets

S Vashishth, D Newman-Griffis, R Joshi, R Dutt… - Journal of biomedical …, 2021 - Elsevier
Objectives Biomedical natural language processing tools are increasingly being applied for
broad-coverage information extraction—extracting medical information of all types in a …

Cross-domain data integration for named entity disambiguation in biomedical text

M Varma, L Orr, S Wu, M Leszczynski, X Ling… - ar** textual mentions to structured
entities, is particularly challenging in the medical domain due to the presence of rare …

Chemical identification and indexing in PubMed full-text articles using deep learning and heuristics

T Almeida, R Antunes, J F. Silva, JR Almeida… - Database, 2022 - academic.oup.com
The identification of chemicals in articles has attracted a large interest in the biomedical
scientific community, given its importance in drug development research. Most of previous …

Automated coding of under-studied medical concept domains: linking physical activity reports to the International Classification of Functioning, Disability, and Health

D Newman-Griffis, E Fosler-Lussier - Frontiers in digital health, 2021 - frontiersin.org
Linking clinical narratives to standardized vocabularies and coding systems is a key
component of unlocking the information in medical text for analysis. However, many …

Overview of TESTLINK at IberLEF 2023: Linking results to clinical laboratory tests and measurements

B Altuna, R Agerri, L Salas-Espejo, JJ Saiz… - … del Lenguaje Natural, 2023 - journal.sepln.org
The TESTLINK task conducted at IberLEF2023 focuses on relation extraction from clinical
cases in Spanish and Basque. The task consists in identifying clinical results and measures …