Big data analytics in healthcare
The rapidly expanding field of big data analytics has started to play a pivotal role in the
evolution of healthcare practices and research. It has provided tools to accumulate, manage …
evolution of healthcare practices and research. It has provided tools to accumulate, manage …
Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods
Reconstructed microbial metabolic networks facilitate a mechanistic description of the
genotype–phenotype relationship through the deployment of constraint-based …
genotype–phenotype relationship through the deployment of constraint-based …
Itaconate links inhibition of succinate dehydrogenase with macrophage metabolic remodeling and regulation of inflammation
Remodeling of the tricarboxylic acid (TCA) cycle is a metabolic adaptation accompanying
inflammatory macrophage activation. During this process, endogenous metabolites can …
inflammatory macrophage activation. During this process, endogenous metabolites can …
Genome-scale models in human metabologenomics
Metabologenomics integrates metabolomics with other omics data types to comprehensively
study the genetic and environmental factors that influence metabolism. These multi-omics …
study the genetic and environmental factors that influence metabolism. These multi-omics …
Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism
Constraint-based models of metabolism are a widely used framework for predicting flux
distributions in genome-scale biochemical networks. The number of published methods for …
distributions in genome-scale biochemical networks. The number of published methods for …
Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes
Hepatocellular carcinoma (HCC) is one of the most frequent forms of liver cancer, and
effective treatment methods are limited due to tumor heterogeneity. There is a great need for …
effective treatment methods are limited due to tumor heterogeneity. There is a great need for …
PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases
PaintOmics is a web server for the integrative analysis and visualisation of multi-omics
datasets using biological pathway maps. PaintOmics 4 has several notable updates that …
datasets using biological pathway maps. PaintOmics 4 has several notable updates that …
Fast reconstruction of compact context-specific metabolic network models
Systemic approaches to the study of a biological cell or tissue rely increasingly on the use of
context-specific metabolic network models. The reconstruction of such a model from high …
context-specific metabolic network models. The reconstruction of such a model from high …
Integration of expression data in genome-scale metabolic network reconstructions
With the advent of high-throughput technologies, the field of systems biology has amassed
an abundance of “omics” data, quantifying thousands of cellular components across a …
an abundance of “omics” data, quantifying thousands of cellular components across a …
DCEO biotechnology: tools to design, construct, evaluate, and optimize the metabolic pathway for biosynthesis of chemicals
Chemical synthesis is a well established route for producing many chemicals on a large
scale, but some drawbacks still exist in this process, such as unstable intermediates …
scale, but some drawbacks still exist in this process, such as unstable intermediates …