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Molecular dynamics electric field crystallization simulations of paracetamol produce a new polymorph
Using molecular dynamics simulations, we demonstrate the ability of high intensity, 1.5
V/nm, static electric fields to induce the formation of a new polymorph of paracetamol, one of …
V/nm, static electric fields to induce the formation of a new polymorph of paracetamol, one of …
Structure‐based analysis of thermodynamic and mechanical properties of cavity‐containing proteins–case study of plant pathogenesis‐related proteins of class 10
We provide theoretical comparisons of the physical properties of eighteen proteins with the
pathogenesis‐related proteins of class 10 (PR‐10) fold, which is characterized by a large …
pathogenesis‐related proteins of class 10 (PR‐10) fold, which is characterized by a large …
Proteins at air–water interfaces: a coarse-grained model
We present a coarse-grained model to describe the adsorption and deformation of proteins
at an air–water interface. The interface is introduced empirically in the form of a localized …
at an air–water interface. The interface is introduced empirically in the form of a localized …
Large conformational fluctuations of the multi-domain xylanase Z of Clostridium thermocellum
The cellulosome is a multi-enzyme machinery which efficiently degrades plant cell-wall
polysaccharides. The multiple domains of the cellulosome complexes are often tethered to …
polysaccharides. The multiple domains of the cellulosome complexes are often tethered to …
Formation mechanism of metal–molecule–metal junctions: molecule-assisted migration on metal defects
Activation energies, E a, measured from molecular exchange experiments are combined
with atomic-scale calculations to describe the migration of bare Au atoms and Au …
with atomic-scale calculations to describe the migration of bare Au atoms and Au …
Peptide recognition capabilities of cellulose in molecular dynamics simulations
Knowing the amino acid discriminating capacity of the surface of cellulose can be valuable
information toward the rational design and re-engineering of the cellulosome in order to …
information toward the rational design and re-engineering of the cellulosome in order to …
An exploration of the universe of polyglutamine structures
Deposits of misfolded proteins in the human brain are associated with the development of
many neurodegenerative diseases. Recent studies show that these proteins have common …
many neurodegenerative diseases. Recent studies show that these proteins have common …
Denaturation of proteins near polar surfaces
A Starzyk, M Cieplak - The Journal of chemical physics, 2011 - pubs.aip.org
All-atom molecular dynamics simulations for proteins placed near a model mica surface
indicate existence of two types of evolution. One type leads to the surface-induced unfolding …
indicate existence of two types of evolution. One type leads to the surface-induced unfolding …
Proteins in the Electric Field near the Surface of Mica
A Starzyk, M Cieplak - The Journal of Chemical Physics, 2013 - pubs.aip.org
We elucidate the nature of the electric field produced by a model mica surface and show that
above some 0.4 nm it is nearly uniform and of order 12 V/nm. The presence of ions in the …
above some 0.4 nm it is nearly uniform and of order 12 V/nm. The presence of ions in the …
[HTML][HTML] Self-assembly of gold nanocrystals into discrete coupled plasmonic structures
Development of methodologies for the controlled chemical assembly of nanoparticles into
plasmonic molecules of predictable spatial geometry is vital in order to harness novel …
plasmonic molecules of predictable spatial geometry is vital in order to harness novel …