Transposable elements in human genetic disease

LM Payer, KH Burns - Nature Reviews Genetics, 2019 - nature.com
Transposable elements are abundant in the human genome, and great strides have been
made in pinpointing variations in these repetitive sequences using whole-genome …

Roles for retrotransposon insertions in human disease

DC Hancks, HH Kazazian - Mobile DNA, 2016 - Springer
Over evolutionary time, the dynamic nature of a genome is driven, in part, by the activity of
transposable elements (TE) such as retrotransposons. On a shorter time scale it has been …

Reproducibility and staging of 3D human retinal organoids across multiple pluripotent stem cell lines

EE Capowski, K Samimi, SJ Mayerl… - …, 2019 - journals.biologists.com
Numerous protocols have been described for producing neural retina from human
pluripotent stem cells (hPSCs), many of which are based on the culture of 3D organoids …

TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets

Y **, OH Tam, E Paniagua, M Hammell - Bioinformatics, 2015 - academic.oup.com
Motivation: Most RNA-seq data analysis software packages are not designed to handle the
complexities involved in properly apportioning short sequencing reads to highly repetitive …

Repetitive DNA and next-generation sequencing: computational challenges and solutions

TJ Treangen, SL Salzberg - Nature Reviews Genetics, 2012 - nature.com
Repetitive DNA sequences are abundant in a broad range of species, from bacteria to
mammals, and they cover nearly half of the human genome. Repeats have always …

Genes and mutations causing retinitis pigmentosa

SP Daiger, LS Sullivan, SJ Bowne - Clinical genetics, 2013 - Wiley Online Library
Retinitis pigmentosa (RP) is a heterogeneous set of inherited retinopathies with many
disease‐causing genes, many known mutations, and highly varied clinical consequences …

Inherited retinal degenerations: current landscape and knowledge gaps

JL Duncan, EA Pierce, AM Laster… - … vision science & …, 2018 - tvst.arvojournals.org
Inherited retinal degenerations (IRDs) represent a diverse group of progressive, visually
debilitating diseases that can lead to blindness in which mutations in genes that are critical …

Photoreceptor outer segment-like structures in long-term 3D retinas from human pluripotent stem cells

KJ Wahlin, JA Maruotti, SR Sripathi, J Ball… - Scientific reports, 2017 - nature.com
The retinal degenerative diseases, which together constitute a leading cause of hereditary
blindness worldwide, are largely untreatable. Development of reliable methods to culture …

Clinically focused molecular investigation of 1000 consecutive families with inherited retinal disease

EM Stone, JL Andorf, SS Whitmore, AP DeLuca… - Ophthalmology, 2017 - Elsevier
Purpose To devise a comprehensive multiplatform genetic testing strategy for inherited
retinal disease and to describe its performance in 1000 consecutive families seen by a …

Three-dimensional retinal organoids facilitate the investigation of retinal ganglion cell development, organization and neurite outgrowth from human pluripotent stem …

CM Fligor, KB Langer, A Sridhar, Y Ren, PK Shields… - Scientific reports, 2018 - nature.com
Retinal organoids are three-dimensional structures derived from human pluripotent stem
cells (hPSCs) which recapitulate the spatial and temporal differentiation of the retina, serving …