Molecular quantitative trait loci

F Aguet, K Alasoo, YI Li, A Battle, HK Im… - Nature reviews …, 2023 - nature.com
Understanding functional effects of genetic variants is one of the key challenges in human
genetics, as much of disease-associated variation is located in non-coding regions with …

Beyond the exome: what's next in diagnostic testing for Mendelian conditions

MH Wojcik, CM Reuter, S Marwaha… - The American Journal of …, 2023 - cell.com
Despite advances in clinical genetic testing, including the introduction of exome sequencing
(ES), more than 50% of individuals with a suspected Mendelian condition lack a precise …

Complex genetic signatures in immune cells underlie autoimmunity and inform therapy

V Orrù, M Steri, C Sidore, M Marongiu, V Serra, S Olla… - Nature …, 2020 - nature.com
We report on the influence of~ 22 million variants on 731 immune cell traits in a cohort of
3,757 Sardinians. We detected 122 significant (P< 1.28× 10− 11) independent association …

Genetics and epidemiology of mutational barcode-defined clonal hematopoiesis

SN Stacey, F Zink, GH Halldorsson, L Stefansdottir… - Nature Genetics, 2023 - nature.com
Clonal hematopoiesis (CH) arises when a substantial proportion of mature blood cells is
derived from a single hematopoietic stem cell lineage. Using whole-genome sequencing of …

Identification of rare-disease genes using blood transcriptome sequencing and large control cohorts

L Frésard, C Smail, NM Ferraro, NA Teran, X Li… - Nature medicine, 2019 - nature.com
It is estimated that 350 million individuals worldwide suffer from rare diseases, which are
predominantly caused by mutation in a single gene. The current molecular diagnostic rate is …

The role of sex in the genomics of human complex traits

EA Khramtsova, LK Davis, BE Stranger - Nature Reviews Genetics, 2019 - nature.com
Nearly all human complex traits and disease phenotypes exhibit some degree of sex
differences, including differences in prevalence, age of onset, severity or disease …

The expanding landscape of alternative splicing variation in human populations

E Park, Z Pan, Z Zhang, L Lin, Y **ng - The American Journal of Human …, 2018 - cell.com
Alternative splicing is a tightly regulated biological process by which the number of gene
products for any given gene can be greatly expanded. Genomic variants in splicing …

The genetics of aging: a vertebrate perspective

PP Singh, BA Demmitt, RD Nath, A Brunet - Cell, 2019 - cell.com
Aging negatively impacts vitality and health. Many genetic pathways that regulate aging
were discovered in invertebrates. However, the genetics of aging is more complex in …

OUTRIDER: a statistical method for detecting aberrantly expressed genes in RNA sequencing data

F Brechtmann, C Mertes, A Matusevičiūtė… - The American Journal of …, 2018 - cell.com
RNA sequencing (RNA-seq) is gaining popularity as a complementary assay to genome
sequencing for precisely identifying the molecular causes of rare disorders. A powerful …

Transcriptomic signatures across human tissues identify functional rare genetic variation

NM Ferraro, BJ Strober, J Einson, NS Abell, F Aguet… - Science, 2020 - science.org
INTRODUCTION The human genome contains tens of thousands of rare (minor allele
frequency< 1%) variants, some of which contribute to disease risk. Using 838 samples with …