[BOK][B] Introduction to proteins: structure, function, and motion

A Kessel, N Ben-Tal - 2018 - taylorfrancis.com
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …

Relating localized protein motions to the reaction coordinate in coenzyme B12‐dependent enzymes

AR Jones, C Levy, S Hay, NS Scrutton - The FEBS Journal, 2013 - Wiley Online Library
The classical picture of enzyme catalysis relies on controlling the entropic and enthalpic
contributions by manipulating reaction barriers and co‐locating reactants and cofactors to …

Non-Aufbau electronic structure in radical enzymes and control of the highly reactive intermediates

MH Khalilian, GA DiLabio - Chemical Science, 2024 - pubs.rsc.org
Radicals are highly reactive, short-lived chemical species that normally react
indiscriminately with biological materials, and yet, nature has evolved thousands of enzymes …

Large-Scale Domain Motions and Pyridoxal-5'-Phosphate Assisted Radical Catalysis in Coenzyme B12-Dependent Aminomutases

AN Maity, YH Chen, SC Ke - International Journal of Molecular Sciences, 2014 - mdpi.com
Lysine 5, 6-aminomutase (5, 6-LAM) and ornithine 4, 5-aminomutase (4, 5-OAM) are two of
the rare enzymes that use assistance of two vitamins as cofactors. These enzymes employ …

Role of active site residues in promoting cobalt–carbon bond homolysis in adenosylcobalamin-dependent mutases revealed through experiment and computation

GD Román-Meléndez, P von Glehn, JN Harvey… - Biochemistry, 2014 - ACS Publications
Adenosylcobalamin (AdoCbl) serves as a source of reactive free radicals that are generated
by homolytic scission of the coenzyme's cobalt–carbon bond. AdoCbl-dependent enzymes …

Spectroscopic and computational studies of cobalamin species with variable lower axial ligation: Implications for the mechanism of Co–C bond activation by class I …

KS Conrad, CD Jordan, KL Brown… - Inorganic …, 2015 - ACS Publications
5′-deoxyadenosylcobalamin (coenzyme B12, AdoCbl) serves as the cofactor for several
enzymes that play important roles in fermentation and catabolism. All of these enzymes …

A mechanochemical switch to control radical intermediates

E Brunk, WF Kellett, NGJ Richards… - Biochemistry, 2014 - ACS Publications
B12-dependent enzymes employ radical species with exceptional prowess to catalyze some
of the most chemically challenging, thermodynamically unfavorable reactions. However …

Dynamic, electrostatic model for the generation and control of high-energy radical intermediates by a coenzyme B12-dependent enzyme

ZG Chen, MA Ziętek, HJ Russell, S Tait, S Hay… - …, 2013 - pmc.ncbi.nlm.nih.gov
High-energy radical species are widespread in biology as transient reaction intermediates
and free radicals. The control of these extremely reactive molecules is crucial to limit …

Electron Spin Echo Envelope Modulation Spectroscopy Reveals How Adenosylcobalamin-Dependent Lysine 5, 6-Aminomutase Positions the Radical Pair …

JR Chen, TX Ke, PA Frey, SC Ke - ACS Catalysis, 2021 - ACS Publications
Electron spin echo envelope modulation (ESEEM) spectroscopy reveals several interactions
that serve to weaken the Co–C5′ bond, through stabilization of the cleaved state, thereby …

Quantum Mechanics/Molecular Mechanics Studies on the Mechanism of Action of Cofactor Pyridoxal 5′‐Phosphate in Ornithine 4, 5‐Aminomutase

J Pang, NS Scrutton, MJ Sutcliffe - Chemistry–A European …, 2014 - Wiley Online Library
A computational study was performed on the experimentally elusive cyclisation step in the
cofactor pyridoxal 5′‐phosphate (PLP)‐dependent d‐ornithine 4, 5‐aminomutase (OAM) …