Microbiome composition and function in aquatic vertebrates: small organisms making big impacts on aquatic animal health

L Sehnal, E Brammer-Robbins… - Frontiers in …, 2021 - frontiersin.org
Aquatic ecosystems are under increasing stress from global anthropogenic and natural
changes, including climate change, eutrophication, ocean acidification, and pollution. In this …

Machine learning applications in microbial ecology, human microbiome studies, and environmental monitoring

RB Ghannam, SM Techtmann - Computational and Structural …, 2021 - Elsevier
Advances in nucleic acid sequencing technology have enabled expansion of our ability to
profile microbial diversity. These large datasets of taxonomic and functional diversity are key …

Environmental DNA: What's behind the term? Clarifying the terminology and recommendations for its future use in biomonitoring

J Pawlowski, L Apothéloz‐Perret‐Gentil… - Molecular …, 2020 - Wiley Online Library
The last decade brought a spectacular development of so‐called environmental (e) DNA
studies. In general,“environmental DNA” is defined as DNA isolated from environmental …

Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap

T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …

[HTML][HTML] Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring

M Sagova-Mareckova, J Boenigk, A Bouchez… - Water research, 2021 - Elsevier
Bioindication has become an indispensable part of water quality monitoring in most
countries of the world, with the presence and abundance of bioindicator taxa, mostly …

Environmental DNA for biomonitoring

J Pawlowski, A Bonin, F Boyer, T Cordier… - Molecular …, 2021 - pmc.ncbi.nlm.nih.gov
The second series of papers concerns the use of eDNA to monitor fish diversity. We focus on
fish because they are among the most important groups of bioindicators and also because …

Practical applications of soil microbiota to improve ecosystem restoration: current knowledge and future directions

SD Peddle, RJ Hodgson, RJ Borrett… - Biological …, 2025 - Wiley Online Library
Soil microbiota are important components of healthy ecosystems. Greater consideration of
soil microbiota in the restoration of biodiverse, functional, and resilient ecosystems is …

[HTML][HTML] Using Machine Learning to make nanomaterials sustainable

JJ Scott-Fordsmand, MJB Amorim - Science of The Total Environment, 2023 - Elsevier
Sustainable development is a key challenge for contemporary human societies; failure to
achieve sustainability could threaten human survival. In this review article, we illustrate how …

Compact and automated eDNA sampler for in situ monitoring of marine environments

A Hendricks, CM Mackie, E Luy, C Sonnichsen… - Scientific Reports, 2023 - nature.com
Using environmental DNA (eDNA) to monitor biodiversity in aquatic environments is
becoming an efficient and cost-effective alternative to other methods such as visual and …

New high-tech flexible networks for the monitoring of deep-sea ecosystems

J Aguzzi, D Chatzievangelou, S Marini… - … science & technology, 2019 - ACS Publications
Increasing interest in the acquisition of biotic and abiotic resources from within the deep sea
(eg, fisheries, oil–gas extraction, and mining) urgently imposes the development of novel …