The minimum information about a proteomics experiment (MIAPE)
Both the generation and the analysis of proteomics data are now widespread, and high-
throughput approaches are commonplace. Protocols continue to increase in complexity as …
throughput approaches are commonplace. Protocols continue to increase in complexity as …
Transcript profiling in host–pathogen interactions
Using genomic technologies, it is now possible to address research hypotheses in the
context of entire developmental or biochemical pathways, gene networks, and chromosomal …
context of entire developmental or biochemical pathways, gene networks, and chromosomal …
Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles
DNA microarrays have been widely applied to cancer transcriptome analysis; however, the
majority of such data are not easily accessible or comparable. Furthermore, several …
majority of such data are not easily accessible or comparable. Furthermore, several …
Sharing detailed research data is associated with increased citation rate
HA Piwowar, RS Day, DB Fridsma - PloS one, 2007 - journals.plos.org
Background Sharing research data provides benefit to the general scientific community, but
the benefit is less obvious for the investigator who makes his or her data available. Principal …
the benefit is less obvious for the investigator who makes his or her data available. Principal …
Detecting functional modules in the yeast protein–protein interaction network
J Chen, B Yuan - Bioinformatics, 2006 - academic.oup.com
Motivation: Identification of functional modules in protein interaction networks is a first step in
understanding the organization and dynamics of cell functions. To ensure that the identified …
understanding the organization and dynamics of cell functions. To ensure that the identified …
Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes
Most common genetic disorders have a complex inheritance and may result from variants in
many genes, each contributing only weak effects to the disease. Pinpointing these disease …
many genes, each contributing only weak effects to the disease. Pinpointing these disease …
Rheumatoid arthritis subtypes identified by genomic profiling of peripheral blood cells: assignment of a type I interferon signature in a subpopulation of patients
T Van Der Pouw Kraan, CA Wijbrandts… - Annals of the …, 2007 - ard.bmj.com
Background: Rheumatoid arthritis (RA) is a heterogeneous disease with unknown cause.
Aim: To identify peripheral blood (PB) gene expression profiles that may distinguish RA …
Aim: To identify peripheral blood (PB) gene expression profiles that may distinguish RA …
Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system
A Galgano, M Forrer, L Jaskiewicz, A Kanitz… - PloS one, 2008 - journals.plos.org
Genome-wide identification of mRNAs regulated by RNA-binding proteins is crucial to
uncover post-transcriptional gene regulatory systems. The conserved PUF family RNA …
uncover post-transcriptional gene regulatory systems. The conserved PUF family RNA …
Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster
AP Gerber, S Luschnig, MA Krasnow… - Proceedings of the …, 2006 - National Acad Sciences
Genome-wide identification of RNAs associated with RNA-binding proteins is crucial for
deciphering posttranscriptional regulatory systems. PUMILIO is a member of the …
deciphering posttranscriptional regulatory systems. PUMILIO is a member of the …
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
Background Sharing of microarray data within the research community has been greatly
facilitated by the development of the disclosure and communication standards MIAME and …
facilitated by the development of the disclosure and communication standards MIAME and …