Netpro2vec: a graph embedding framework for biomedical applications
The ever-increasing importance of structured data in different applications, especially in the
biomedical field, has driven the need for reducing its complexity through projections into a …
biomedical field, has driven the need for reducing its complexity through projections into a …
Learning from metabolic networks: Current trends and future directions for precision medicine
Background: Systems biology and network modeling represent, nowadays, the hallmark
approaches for the development of predictive and targeted-treatment based precision …
approaches for the development of predictive and targeted-treatment based precision …
Representing ensembles of networks for fuzzy cluster analysis: a case study
As the statistical analysis of networks finds application in an increasing number of
disciplines, novel methodologies are needed to handle such complexity. In particular, cluster …
disciplines, novel methodologies are needed to handle such complexity. In particular, cluster …
Adversarial attacks on graph-level embedding methods: A case study
As the number of graph-level embedding techniques increases at an unprecedented speed,
questions arise about their behavior and performance when training data undergo …
questions arise about their behavior and performance when training data undergo …
Clustering analysis of tumor metabolic networks
Background Biological networks are representative of the diverse molecular interactions that
occur within cells. Some of the commonly studied biological networks are modeled through …
occur within cells. Some of the commonly studied biological networks are modeled through …
Whole-graph embedding and adversarial attacks for life sciences
Networks provide a suitable model for many scientific and technological problems that
require the representation of complex entities and their relations. Life sciences applications …
require the representation of complex entities and their relations. Life sciences applications …
Model simplification for supervised classification of metabolic networks
Many real applications require the representation of complex entities and their relations.
Frequently, networks are the chosen data structures, due to their ability to highlight …
Frequently, networks are the chosen data structures, due to their ability to highlight …
TumorMet: a repository of tumor metabolic networks derived from context-specific genome-scale metabolic models
Studies about the metabolic alterations during tumorigenesis have increased our knowledge
of the underlying mechanisms and consequences, which are important for diagnostic and …
of the underlying mechanisms and consequences, which are important for diagnostic and …
On whole-graph embedding techniques
Networks provide suitable representative models in many applications, ranging from social
to life sciences. Such representations are able to capture interactions and dependencies …
to life sciences. Such representations are able to capture interactions and dependencies …
Novel Data Science Methodologies for Essential Genes Identification Based on Network Analysis
Essential genes (EGs) are fundamental for the growth and survival of a cell or an organism.
Identifying EGs is an important issue in many areas of biomedical research, such as …
Identifying EGs is an important issue in many areas of biomedical research, such as …