Fractal symmetry of protein interior: what have we learned?

A Banerji, I Ghosh - Cellular and Molecular Life Sciences, 2011 - Springer
The application of fractal dimension-based constructs to probe the protein interior dates
back to the development of the concept of fractal dimension itself. Numerous approaches …

Oligomerization of FVFLM peptides and their ability to inhibit beta amyloid peptides aggregation: consideration as a possible model

M Kouza, A Banerji, A Kolinski, IA Buhimschi… - Physical Chemistry …, 2017 - pubs.rsc.org
Preeclampsia, a pregnancy-specific disorder, shares typical pathophysiological features
with protein misfolding disorders including Alzheimer's disease. Characteristic for …

Fractal nature of protein surface roughness: a note on quantification of change of surface roughness in active sites, before and after binding

A Banerji, C Navare - Journal of Molecular Recognition, 2013 - Wiley Online Library
Year 2010 marked the 25th year since we came to know that roughness of a protein surface
has fractal symmetry. Ever since the publication of Lewis and Rees' paper, hundreds of …

[KNJIGA][B] Fractal symmetry of protein interior

A Banerji - 2013 - Springer
The essential question that fractal dimensions attempt to answer is about the scales in
Nature. This is not exactly a new question. From Euclid to Poincare to Mandelbrot, many …

An attempt to construct a (general) mathematical framework to model biological “context-dependence”

A Banerji - Systems and synthetic biology, 2013 - Springer
Context-dependent nature of biological phenomena is well documented in every branch of
biology. While there have been few previous attempts to (implicitly) model various …

Studying protein interior with fractal dimension

A Banerji, A Banerji - Fractal Symmetry of Protein Interior, 2013 - Springer
Here we look at the interior of protein structures, as viewed through the prism of fractal
dimensions. History of application of fractal dimension-based constructs to probe protein …

Structural and evolutionary tunnels of pairwise residue-interaction symmetries connect different structural classes of proteins

A Banerji - arxiv preprint arxiv:1302.4574, 2013 - arxiv.org
Studying all non-redundant proteins in 76 most-commonly found structural domains, the
present work attempts to decipher latent patterns that characterize acceptable and …

3-10 and Pi-Helices: Stochastic Events on Sequence Space; Reasons and Implications of their Accidental Occurrences across Protein Universe

PP Singh, A Banerji - arxiv preprint arxiv:0911.4871, 2009 - arxiv.org
Considering all available non-redundant protein structures across different structural
classes, present study identified the probabilistic characteristics that describe several facets …