PCR and omics based techniques to study the diversity, ecology and biology of anaerobic fungi: insights, challenges and opportunities

JE Edwards, RJ Forster, TM Callaghan… - Frontiers in …, 2017 - frontiersin.org
Anaerobic fungi (phylum Neocallimastigomycota) are common inhabitants of the digestive
tract of mammalian herbivores, and in the rumen, can account for up to 20% of the microbial …

[HTML][HTML] The changing epitome of species identification–DNA barcoding

MA Ali, G Gyulai, N Hidvegi, B Kerti… - Saudi journal of …, 2014 - Elsevier
The discipline taxonomy (the science of naming and classifying organisms, the original
bioinformatics and a basis for all biology) is fundamentally important in ensuring the quality …

5.8 S-28S rRNA interaction and HMM-based ITS2 annotation

A Keller, T Schleicher, J Schultz, T Müller, T Dandekar… - Gene, 2009 - Elsevier
The internal transcribed spacer 2 (ITS2) of the nuclear ribosomal repeat unit is one of the
most commonly applied phylogenetic markers. It is a fast evolving locus, which makes it …

Specialization on traits as basis for the niche‐breadth of flower visitors and as structuring mechanism of ecological networks

RR Junker, N Blüthgen, T Brehm… - Functional …, 2013 - Wiley Online Library
Biotic interactions do not occur in isolation but are imbedded in a network of species
interactions. Network analysis facilitates the compilation and understanding of the …

The ITS2 Database III—sequences and structures for phylogeny

C Koetschan, F Förster, A Keller… - Nucleic acids …, 2010 - academic.oup.com
The internal transcribed spacer 2 (ITS2) is a widely used phylogenetic marker. In the past, it
has mainly been used for species level classifications. Nowadays, a wider applicability …

Characterization and classification of highly productive microalgae strains discovered for biofuel and bioproduct generation

P Neofotis, A Huang, K Sury, W Chang, F Joseph… - Algal Research, 2016 - Elsevier
This paper describes the characteristics of microalgal strains that originated out of an
isolation and screening project included within the National Alliance for Advanced Biofuels …

ITS2 sequence–structure analysis in phylogenetics: a how-to manual for molecular systematics

J Schultz, M Wolf - Molecular phylogenetics and evolution, 2009 - Elsevier
The information that can be obtained from the secondary structure of the nuclear ribosomal
internal transcribed spacer 2 (ITS2) is substantial, and yet many studies exploit this …

Composition of epiphytic bacterial communities differs on petals and leaves

RR Junker, C Loewel, R Gross, S Dötterl… - Plant …, 2011 - Wiley Online Library
The epiphytic bacterial communities colonising roots and leaves have been described for
many plant species. In contrast, microbiologists have rarely considered flowers of naturally …

[PDF][PDF] An assessment of proposed DNA barcodes in freshwater green algae

JD Hall, K Fučíková, C Lo, LA Lewis… - Cryptogamie …, 2010 - sciencepress.mnhn.fr
The development of DNA barcodes for green algae would aid in their accurate and rapid
identification. This is particularly important for the green algae because in many species …

Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees

A Keller, F Förster, T Müller, T Dandekar, J Schultz… - Biology Direct, 2010 - Springer
Background In several studies, secondary structures of ribosomal genes have been used to
improve the quality of phylogenetic reconstructions. An extensive evaluation of the benefits …