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PCR and omics based techniques to study the diversity, ecology and biology of anaerobic fungi: insights, challenges and opportunities
Anaerobic fungi (phylum Neocallimastigomycota) are common inhabitants of the digestive
tract of mammalian herbivores, and in the rumen, can account for up to 20% of the microbial …
tract of mammalian herbivores, and in the rumen, can account for up to 20% of the microbial …
[HTML][HTML] The changing epitome of species identification–DNA barcoding
The discipline taxonomy (the science of naming and classifying organisms, the original
bioinformatics and a basis for all biology) is fundamentally important in ensuring the quality …
bioinformatics and a basis for all biology) is fundamentally important in ensuring the quality …
5.8 S-28S rRNA interaction and HMM-based ITS2 annotation
The internal transcribed spacer 2 (ITS2) of the nuclear ribosomal repeat unit is one of the
most commonly applied phylogenetic markers. It is a fast evolving locus, which makes it …
most commonly applied phylogenetic markers. It is a fast evolving locus, which makes it …
Specialization on traits as basis for the niche‐breadth of flower visitors and as structuring mechanism of ecological networks
Biotic interactions do not occur in isolation but are imbedded in a network of species
interactions. Network analysis facilitates the compilation and understanding of the …
interactions. Network analysis facilitates the compilation and understanding of the …
The ITS2 Database III—sequences and structures for phylogeny
The internal transcribed spacer 2 (ITS2) is a widely used phylogenetic marker. In the past, it
has mainly been used for species level classifications. Nowadays, a wider applicability …
has mainly been used for species level classifications. Nowadays, a wider applicability …
Characterization and classification of highly productive microalgae strains discovered for biofuel and bioproduct generation
P Neofotis, A Huang, K Sury, W Chang, F Joseph… - Algal Research, 2016 - Elsevier
This paper describes the characteristics of microalgal strains that originated out of an
isolation and screening project included within the National Alliance for Advanced Biofuels …
isolation and screening project included within the National Alliance for Advanced Biofuels …
ITS2 sequence–structure analysis in phylogenetics: a how-to manual for molecular systematics
J Schultz, M Wolf - Molecular phylogenetics and evolution, 2009 - Elsevier
The information that can be obtained from the secondary structure of the nuclear ribosomal
internal transcribed spacer 2 (ITS2) is substantial, and yet many studies exploit this …
internal transcribed spacer 2 (ITS2) is substantial, and yet many studies exploit this …
Composition of epiphytic bacterial communities differs on petals and leaves
The epiphytic bacterial communities colonising roots and leaves have been described for
many plant species. In contrast, microbiologists have rarely considered flowers of naturally …
many plant species. In contrast, microbiologists have rarely considered flowers of naturally …
[PDF][PDF] An assessment of proposed DNA barcodes in freshwater green algae
The development of DNA barcodes for green algae would aid in their accurate and rapid
identification. This is particularly important for the green algae because in many species …
identification. This is particularly important for the green algae because in many species …
Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees
Background In several studies, secondary structures of ribosomal genes have been used to
improve the quality of phylogenetic reconstructions. An extensive evaluation of the benefits …
improve the quality of phylogenetic reconstructions. An extensive evaluation of the benefits …