Structure and function of DNA methyltransferases.

X Cheng - Annual review of biophysics and biomolecular structure, 1995 - europepmc.org
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation
by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of …

Hhal methyltransferase flips its target base out of the DNA helix

S Klimasauskas, S Kumar, RJ Roberts, X Cheng - Cell, 1994 - cell.com
The crystal structure has been determined at 2.8 A resolution for a chemically-trapped
covalent reaction intermediate between the Hhal DNA cytosine-lmethyltransferase, S …

Crystal structures of A‐DNA duplexes

MC Wahl, M Sundaralingam - Biopolymers: Original Research …, 1997 - Wiley Online Library
All crystal structures of A‐DNA duplexes exhibit a typical crystal packing, with the termini of
one molecule abutting the shallow grooves of symmetry related neighbors, while all other …

The B-DNA Dodecamer at High Resolution Reveals a Spine of Water on Sodium,

X Shui, L McFail-Isom, GG Hu, LD Williams - Biochemistry, 1998 - ACS Publications
We describe a very accurate addition (called structure X here) to the B-DNA dodecamer
family of X-ray structures. Our results confirm the observation of Drew and Dickerson [(1981) …

The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions

BF Eichman, JM Vargason… - Proceedings of the …, 2000 - National Acad Sciences
Holliday junctions are important structural intermediates in recombination, viral integration,
and DNA repair. We present here the single-crystal structure of the inverted repeat …

Conformations of the sugar‐phosphate backbone in helical DNA crystal structures

B Schneider, S Neidle… - … : Original Research on …, 1997 - Wiley Online Library
The DNA backbone geometry was analyzed for 96 crystal structures of
oligodeoxynucleotides. The ranges and mean values of the torsion angles for the observed …

Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA

MA El Hassan, CR Calladine - Journal of molecular biology, 1996 - Elsevier
When DNA is bent around a protein, it must distort. The distortion occurs by changes in the
conformation of successive dinucleotide steps. Bending does not necessarily occur …

Hydration of the DNA bases is local

B Schneider, HM Berman - Biophysical journal, 1995 - cell.com
Ordered hydration sites were determined for the nucleotide bases in B-type conformations
using the crystal structure data on 14 B-DNA decamer structures. A method of density …

Conformational characteristics of DNA: empirical classifications and a hypothesis for the conformational behaviour of dinucleotide steps

MA El Hassan, CR Calladine - … Transactions of the …, 1997 - royalsocietypublishing.org
This paper is concerned with an investigation of the geometry and structure of DNA as
revealed by X–ray diffraction of single crystal oligomeric structures. A database of atomic …

How sequence defines structure: a crystallographic map of DNA structure and conformation

FA Hays, A Teegarden, ZJR Jones… - Proceedings of the …, 2005 - National Acad Sciences
The fundamental question of how sequence defines conformation is explicitly answered if
the structures of all possible sequences of a macromolecule are determined. We present …