Structure and function of DNA methyltransferases.
X Cheng - Annual review of biophysics and biomolecular structure, 1995 - europepmc.org
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation
by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of …
by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of …
Hhal methyltransferase flips its target base out of the DNA helix
The crystal structure has been determined at 2.8 A resolution for a chemically-trapped
covalent reaction intermediate between the Hhal DNA cytosine-lmethyltransferase, S …
covalent reaction intermediate between the Hhal DNA cytosine-lmethyltransferase, S …
Crystal structures of A‐DNA duplexes
MC Wahl, M Sundaralingam - Biopolymers: Original Research …, 1997 - Wiley Online Library
All crystal structures of A‐DNA duplexes exhibit a typical crystal packing, with the termini of
one molecule abutting the shallow grooves of symmetry related neighbors, while all other …
one molecule abutting the shallow grooves of symmetry related neighbors, while all other …
The B-DNA Dodecamer at High Resolution Reveals a Spine of Water on Sodium,
X Shui, L McFail-Isom, GG Hu, LD Williams - Biochemistry, 1998 - ACS Publications
We describe a very accurate addition (called structure X here) to the B-DNA dodecamer
family of X-ray structures. Our results confirm the observation of Drew and Dickerson [(1981) …
family of X-ray structures. Our results confirm the observation of Drew and Dickerson [(1981) …
The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions
BF Eichman, JM Vargason… - Proceedings of the …, 2000 - National Acad Sciences
Holliday junctions are important structural intermediates in recombination, viral integration,
and DNA repair. We present here the single-crystal structure of the inverted repeat …
and DNA repair. We present here the single-crystal structure of the inverted repeat …
Conformations of the sugar‐phosphate backbone in helical DNA crystal structures
The DNA backbone geometry was analyzed for 96 crystal structures of
oligodeoxynucleotides. The ranges and mean values of the torsion angles for the observed …
oligodeoxynucleotides. The ranges and mean values of the torsion angles for the observed …
Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA
MA El Hassan, CR Calladine - Journal of molecular biology, 1996 - Elsevier
When DNA is bent around a protein, it must distort. The distortion occurs by changes in the
conformation of successive dinucleotide steps. Bending does not necessarily occur …
conformation of successive dinucleotide steps. Bending does not necessarily occur …
Hydration of the DNA bases is local
Ordered hydration sites were determined for the nucleotide bases in B-type conformations
using the crystal structure data on 14 B-DNA decamer structures. A method of density …
using the crystal structure data on 14 B-DNA decamer structures. A method of density …
Conformational characteristics of DNA: empirical classifications and a hypothesis for the conformational behaviour of dinucleotide steps
MA El Hassan, CR Calladine - … Transactions of the …, 1997 - royalsocietypublishing.org
This paper is concerned with an investigation of the geometry and structure of DNA as
revealed by X–ray diffraction of single crystal oligomeric structures. A database of atomic …
revealed by X–ray diffraction of single crystal oligomeric structures. A database of atomic …
How sequence defines structure: a crystallographic map of DNA structure and conformation
FA Hays, A Teegarden, ZJR Jones… - Proceedings of the …, 2005 - National Acad Sciences
The fundamental question of how sequence defines conformation is explicitly answered if
the structures of all possible sequences of a macromolecule are determined. We present …
the structures of all possible sequences of a macromolecule are determined. We present …