Polyproline-II helix in proteins: structure and function
AA Adzhubei, MJE Sternberg, AA Makarov - Journal of molecular biology, 2013 - Elsevier
The poly-l-proline type II (PPII) helix in recent years has emerged clearly as a structural class
not only of fibrillar proteins (in collagen, PPII is a dominant conformation) but also of the …
not only of fibrillar proteins (in collagen, PPII is a dominant conformation) but also of the …
Raman spectroscopy of proteins: from peptides to large assemblies
R Tuma - Journal of Raman Spectroscopy: An International …, 2005 - Wiley Online Library
Raman spectroscopy has become a versatile tool in protein science and biotechnology.
Recent advances in spectral assignments and vibrational theory, examples of use in …
Recent advances in spectral assignments and vibrational theory, examples of use in …
Comparison of multiple Amber force fields and development of improved protein backbone parameters
The ff94 force field that is commonly associated with the Amber simulation package is one of
the most widely used parameter sets for biomolecular simulation. After a decade of …
the most widely used parameter sets for biomolecular simulation. After a decade of …
Structure of condensed phase peptides: insights from vibrational circular dichroism and Raman optical activity techniques
TA Keiderling - Chemical reviews, 2020 - ACS Publications
Peptides and proteins are naturally chiral molecular systems so that sensing their structure
and conformation with chirality-based spectral methods is an obvious and long-used …
and conformation with chirality-based spectral methods is an obvious and long-used …
Chiral gold nanoparticles
C Gautier, T Bürgi - ChemPhysChem, 2009 - Wiley Online Library
Nanoparticle chirality has attracted much attention recently, and the application of chiral
nanoparticles to chiral technologies (see figure) is also of interest. This Minireview deals …
nanoparticles to chiral technologies (see figure) is also of interest. This Minireview deals …
Structure and dynamics of the homologous series of alanine peptides: a joint molecular dynamics/NMR study
The ϕ, ψ backbone angle distribution of small homopolymeric model peptides is
investigated by a joint molecular dynamics (MD) simulation and heteronuclear NMR study …
investigated by a joint molecular dynamics (MD) simulation and heteronuclear NMR study …
Conformation of the backbone in unfolded proteins
Despite its theoretical and practical importance, protein folding remains among the most
fundamental unsolved problems in the life sciences. The challenge of predicting folded …
fundamental unsolved problems in the life sciences. The challenge of predicting folded …
The structure of “unstructured” regions in peptides and proteins: role of the polyproline II helix in protein folding and recognition
A Rath, AR Davidson, CM Deber - Peptide Science: Original …, 2005 - Wiley Online Library
Classical descriptions of the three‐dimensional shapes of proteins usually invoke three
main structures: α‐helix, β‐sheet, and β‐turn. More recently, the polyproline II (PPII) structure …
main structures: α‐helix, β‐sheet, and β‐turn. More recently, the polyproline II (PPII) structure …
Circular dichroism spectrum of peptides in the poly (Pro) II conformation
RW Woody - Journal of the American Chemical Society, 2009 - ACS Publications
The poly (Pro) II (PII) conformation is increasingly recognized as an important element in
peptide and protein conformation. Circular dichroism (CD) is one of the most useful methods …
peptide and protein conformation. Circular dichroism (CD) is one of the most useful methods …
Advances in vibrational spectroscopy as a sensitive probe of peptide and protein structure: A critical review
R Schweitzer-Stenner - Vibrational Spectroscopy, 2006 - Elsevier
Over the last 40 years the theoretical basis has been developed for using vibrational
spectroscopy as a tool for peptide and protein structure analysis. In spite of these efforts it is …
spectroscopy as a tool for peptide and protein structure analysis. In spite of these efforts it is …