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[HTML][HTML] Biomolecular feedback controllers: from theory to applications
Highlights•Synthetic biomolecular feedback controllers have promising applications in
various fields.•Negative-feedback controllers enhance dynamic performance and reduce …
various fields.•Negative-feedback controllers enhance dynamic performance and reduce …
A hierarchy of biomolecular proportional-integral-derivative feedback controllers for robust perfect adaptation and dynamic performance
Abstract Proportional-Integral-Derivative (PID) feedback controllers are the most widely used
controllers in industry. Recently, the design of molecular PID-controllers has been identified …
controllers in industry. Recently, the design of molecular PID-controllers has been identified …
Engineered live bacteria as disease detection and diagnosis tools
Sensitive and minimally invasive medical diagnostics are essential to the early detection of
diseases, monitoring their progression and response to treatment. Engineered bacteria as …
diseases, monitoring their progression and response to treatment. Engineered bacteria as …
On the design of a PID bio-controller with set point weighting and filtered derivative action
Effective and robust regulation of biomolecular processes is crucial for designing reliable
synthetic bio-devices functioning in uncertain and constantly changing biological …
synthetic bio-devices functioning in uncertain and constantly changing biological …
Pyecolib: a python library for simulating stochastic cell size dynamics
Recently, there has been an increasing need for tools to simulate cell size regulation due to
important applications in cell proliferation and gene expression. However, implementing the …
important applications in cell proliferation and gene expression. However, implementing the …
Noise properties of adaptation-conferring biochemical control modules
A key goal of synthetic biology is to develop functional biochemical modules with network-
independent properties. Antithetic integral feedback (AIF) is a recently developed control …
independent properties. Antithetic integral feedback (AIF) is a recently developed control …
Stochastic dynamics of the logistic growth model subjected to environmental perturbations
The stochastic logistic model is widely used to capture random fluctuations arising from birth-
death processes in ecological populations. We use this model to study the impact of …
death processes in ecological populations. We use this model to study the impact of …
Multicellular PID control for robust regulation of biological processes
This article presents the first implementation of a proportional-integral-derivative (PID)
biomolecular controller within a consortium of different cell populations, aimed at robust …
biomolecular controller within a consortium of different cell populations, aimed at robust …
AC-BioSD: A biomolecular signal differentiator module with enhanced performance
Temporal gradient estimation is a pervasive phenomenon in natural biological systems and
holds great promise for synthetic counterparts with broad-reaching applications. Here, we …
holds great promise for synthetic counterparts with broad-reaching applications. Here, we …
Optimal network transmission to minimize state-estimation error and channel usage
We consider the problem of transmitting the state value of a dynamical system through a
communication network. The dynamics of the error in state estimation is modeled using a …
communication network. The dynamics of the error in state estimation is modeled using a …