Correlation and association analyses in microbiome study integrating multiomics in health and disease

Y **a - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …

So many variables: joint modeling in community ecology

DI Warton, FG Blanchet, RB O'Hara… - Trends in ecology & …, 2015 - cell.com
Technological advances have enabled a new class of multivariate models for ecology, with
the potential now to specify a statistical model for abundances jointly across many taxa, to …

MicrobiomeAnalyst 2.0: comprehensive statistical, functional and integrative analysis of microbiome data

Y Lu, G Zhou, J Ewald, Z Pang, T Shiri… - Nucleic Acids …, 2023 - academic.oup.com
Microbiome studies have become routine in biomedical, agricultural and environmental
sciences with diverse aims, including diversity profiling, functional characterization, and …

[HTML][HTML] Fostering temporal crop diversification to reduce pesticide use

M Guinet, G Adeux, S Cordeau, E Courson… - Nature …, 2023 - nature.com
Temporal crop diversification could reduce pesticide use by increasing the proportion of
crops with low pesticide use (dilution effects) or enhancing the regulation of pests, weeds …

[HTML][HTML] Microbiota-gut-brain axis drives overeating disorders

S Fan, W Guo, D **ao, M Guan, T Liao, S Peng, A Feng… - Cell Metabolism, 2023 - cell.com
Overeating disorders (ODs), usually stemming from dieting history and stress, remain a
pervasive issue in contemporary society, with the pathological mechanisms largely …

RRPP: An r package for fitting linear models to high‐dimensional data using residual randomization

ML Collyer, DC Adams - Methods in Ecology and Evolution, 2018 - Wiley Online Library
Residual randomization in permutation procedures (RRPP) is an appropriate means of
generating empirical sampling distributions for ANOVA statistics and linear model …

Modelling palaeoecological time series using generalised additive models

GL Simpson - Frontiers in Ecology and Evolution, 2018 - frontiersin.org
In the absence of annual laminations, time series generated from lake sediments or other
similar stratigraphic sequences are irregularly spaced in time, which complicates formal …

Variations in oral microbiota associated with oral cancer

H Zhao, M Chu, Z Huang, X Yang, S Ran, B Hu… - Scientific reports, 2017 - nature.com
Individual bacteria and shifts in microbiome composition are associated with human
disease, including cancer. To unravel the connections underlying oral bacterial dysbiosis …

PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: what null hypothesis are you testing?

MJ Anderson, DCI Walsh - Ecological monographs, 2013 - Wiley Online Library
ANOSIM, PERMANOVA, and the Mantel test are all resemblance‐based permutation
methods widely used in ecology. Here, we report the results of the first simulation study, to …

Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter

JB Logue, CA Stedmon, AM Kellerman… - The ISME …, 2016 - academic.oup.com
Bacteria play a central role in the cycling of carbon, yet our understanding of the relationship
between the taxonomic composition and the degradation of dissolved organic matter (DOM) …