So many variables: joint modeling in community ecology

DI Warton, FG Blanchet, RB O'Hara… - Trends in ecology & …, 2015 - cell.com
Technological advances have enabled a new class of multivariate models for ecology, with
the potential now to specify a statistical model for abundances jointly across many taxa, to …

Application of multivariate statistical techniques in microbial ecology

O Paliy, V Shankar - Molecular ecology, 2016 - Wiley Online Library
Recent advances in high‐throughput methods of molecular analyses have led to an
explosion of studies generating large‐scale ecological data sets. In particular, noticeable …

MicrobiomeAnalyst 2.0: comprehensive statistical, functional and integrative analysis of microbiome data

Y Lu, G Zhou, J Ewald, Z Pang, T Shiri… - Nucleic Acids …, 2023 - academic.oup.com
Microbiome studies have become routine in biomedical, agricultural and environmental
sciences with diverse aims, including diversity profiling, functional characterization, and …

[BOOK][B] Experimental design and data analysis for biologists

GP Quinn, MJ Keough - 2002 - books.google.com
Publisher Description (unedited publisher data) An essential textbook for any student or
researcher in biology needing to design experiments, sampling programs or analyse the …

PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: what null hypothesis are you testing?

MJ Anderson, DCI Walsh - Ecological monographs, 2013 - Wiley Online Library
ANOSIM, PERMANOVA, and the Mantel test are all resemblance‐based permutation
methods widely used in ecology. Here, we report the results of the first simulation study, to …

[PDF][PDF] mvabund–an R package for model-based analysis of multivariate abundance data

YI Wang, U Naumann, ST Wright… - Methods in Ecology …, 2012 - pdixon.stat.iastate.edu
mvabund– an R package for model‐based analysis of multivariate abundance data Page 1
mvabund – an R package for model-based analysis of multivariate abundance data Yi …

RRPP: An r package for fitting linear models to high‐dimensional data using residual randomization

ML Collyer, DC Adams - Methods in Ecology and Evolution, 2018 - Wiley Online Library
Residual randomization in permutation procedures (RRPP) is an appropriate means of
generating empirical sampling distributions for ANOVA statistics and linear model …

Modelling palaeoecological time series using generalised additive models

GL Simpson - Frontiers in Ecology and Evolution, 2018 - frontiersin.org
In the absence of annual laminations, time series generated from lake sediments or other
similar stratigraphic sequences are irregularly spaced in time, which complicates formal …

[HTML][HTML] Fostering temporal crop diversification to reduce pesticide use

M Guinet, G Adeux, S Cordeau, E Courson… - Nature …, 2023 - nature.com
Temporal crop diversification could reduce pesticide use by increasing the proportion of
crops with low pesticide use (dilution effects) or enhancing the regulation of pests, weeds …

Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter

JB Logue, CA Stedmon, AM Kellerman… - The ISME …, 2016 - academic.oup.com
Bacteria play a central role in the cycling of carbon, yet our understanding of the relationship
between the taxonomic composition and the degradation of dissolved organic matter (DOM) …