Origins and challenges of viral dark matter
SR Krishnamurthy, D Wang - Virus research, 2017 - Elsevier
The accurate classification of viral dark matter–metagenomic sequences that originate from
viruses but do not align to any reference virus sequences–is one of the major obstacles in …
viruses but do not align to any reference virus sequences–is one of the major obstacles in …
Agroforestry—The next step in sustainable and resilient agriculture
MH Wilson, ST Lovell - Sustainability, 2016 - mdpi.com
Agriculture faces the unprecedented task of feeding a world population of 9 billion people by
2050 while simultaneously avoiding harmful environmental and social effects. One effort to …
2050 while simultaneously avoiding harmful environmental and social effects. One effort to …
Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida
A Bombarely, M Moser, A Amrad, M Bao, L Bapaume… - Nature plants, 2016 - nature.com
Petunia hybrida is a popular bedding plant that has a long history as a genetic model
system. We report the whole-genome sequencing and assembly of inbred derivatives of its …
system. We report the whole-genome sequencing and assembly of inbred derivatives of its …
Deep roots and splendid boughs of the global plant virome
Land plants host a vast and diverse virome that is dominated by RNA viruses, with major
additional contributions from reverse-transcribing and single-stranded (ss) DNA viruses …
additional contributions from reverse-transcribing and single-stranded (ss) DNA viruses …
Badnaviruses: the current global scenario
AI Bhat, T Hohn, R Selvarajan - Viruses, 2016 - mdpi.com
Badnaviruses (Family: Caulimoviridae; Genus: Badnavirus) are non-enveloped bacilliform
DNA viruses with a monopartite genome containing about 7.2 to 9.2 kb of dsDNA with three …
DNA viruses with a monopartite genome containing about 7.2 to 9.2 kb of dsDNA with three …
Virus latency and the impact on plants
H Takahashi, T Fukuhara, H Kitazawa… - Frontiers in …, 2019 - frontiersin.org
Plant viruses are thought to be essentially harmful to the lives of their cultivated crop hosts.
In most cases studied, the interaction between viruses and cultivated crop plants negatively …
In most cases studied, the interaction between viruses and cultivated crop plants negatively …
Structural and sequence diversity of eukaryotic transposable elements
KK Kojima - Genes & Genetic Systems, 2019 - jstage.jst.go.jp
The majority of eukaryotic genomes contain a large fraction of repetitive sequences that
primarily originate from transpositional bursts of transposable elements (TEs). Repbase …
primarily originate from transpositional bursts of transposable elements (TEs). Repbase …
ICTV Virus Taxonomy Profile: Caulimoviridae
PY Teycheney, ADW Geering… - Journal of General …, 2020 - microbiologyresearch.org
Caulimoviridae is a family of non-enveloped reverse-transcribing plant viruses with non-
covalently closed circular dsDNA genomes of 7.1–9.8 kbp in the order Ortervirales. They …
covalently closed circular dsDNA genomes of 7.1–9.8 kbp in the order Ortervirales. They …
A primer on the analysis of high-throughput sequencing data for detection of plant viruses
High-throughput sequencing (HTS) technologies have become indispensable tools
assisting plant virus diagnostics and research thanks to their ability to detect any plant virus …
assisting plant virus diagnostics and research thanks to their ability to detect any plant virus …
Viruses as vectors of horizontal transfer of genetic material in eukaryotes
Highlights•Horizontal transfer of genetic material (especially transposable elements)
between eukaryotes is more frequent than previously thought.•Host-to-virus horizontal …
between eukaryotes is more frequent than previously thought.•Host-to-virus horizontal …