A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …
monitoring biodiversity in ecology. However, taxa identifications produced through …
Water eDNA metabarcoding is effective in detecting non-native species in marinas, but detection errors still hinder its use for passive monitoring
Marinas are high-priority targets for marine non-indigenous species (NIS), where they
compose a large portion of the biofouling communities. The practicality of water samples …
compose a large portion of the biofouling communities. The practicality of water samples …
Opportunities and inherent limits of using environmental DNA for population genetics
Molecular techniques using DNA retrieved from community or environmental samples, in
particular environmental DNA (eDNA), are becoming increasingly popular for detecting …
particular environmental DNA (eDNA), are becoming increasingly popular for detecting …
Comparative analysis of the bacterial diversity of Chinese fermented sausages using high-throughput sequencing
QQ Zhang, D Li, W Zhang, M Jiang, XH Chen… - Lwt, 2021 - Elsevier
Chinese dry fermented sausage is a spontaneously fermented food with complex microbial
diversity. In this study, the bacterial diversity of long-and round-type Chinese dry fermented …
diversity. In this study, the bacterial diversity of long-and round-type Chinese dry fermented …
Optimal sequence similarity thresholds for clustering of molecular operational taxonomic units in DNA metabarcoding studies
A Bonin, A Guerrieri, GF Ficetola - Molecular Ecology …, 2023 - Wiley Online Library
Clustering approaches are pivotal to handle the many sequence variants obtained in DNA
metabarcoding data sets, and therefore they have become a key step of metabarcoding …
metabarcoding data sets, and therefore they have become a key step of metabarcoding …
[PDF][PDF] Persisting roadblocks in arthropod monitoring using non-destructive metabarcoding from collection media of passive traps
Background. Broad-scale monitoring of arthropods is often carried out with passive traps
(eg, Malaise traps) that can collect thousands of specimens per sample. The identification of …
(eg, Malaise traps) that can collect thousands of specimens per sample. The identification of …
Environmental gradients and optimal fixation time revealed with DNA metabarcoding of benthic sample fixative
O Vargovčík, Z Čiamporová-Zaťovičová, P Beracko… - Scientific Reports, 2024 - nature.com
Assessments of biodiversity and ecosystem status can benefit from DNA metabarcoding as a
means to streamline sample processing and specimen identification. Moreover, processing …
means to streamline sample processing and specimen identification. Moreover, processing …
Testing the applicability of environmental DNA metabarcoding to landscape genetics
S Nakajima, K Tsuri - Molecular Ecology Resources, 2024 - Wiley Online Library
Landscape genetics is a field dealing with local genetic differences and contributes to
strategic conservation planning. Recently, environmental DNA (eDNA) metabarcoding has …
strategic conservation planning. Recently, environmental DNA (eDNA) metabarcoding has …
Diet Diversity of the Fluviatile Masu Salmon, Oncorhynchus masou (Brevoort 1856) Revealed via Gastrointestinal Environmental DNA Metabarcoding and …
L Li, X Yin, Q Wan, D Rusitanmu, J Han - Biology, 2024 - mdpi.com
Simple Summary Masu salmon (Oncorhynchus masou), a commercially important fish
endemic to the North Pacific Ocean, received national second-level protected animal status …
endemic to the North Pacific Ocean, received national second-level protected animal status …
Non-destructive DNA metabarcoding of arthropods using collection medium from passive traps
Background Broad-scale monitoring of arthropods is often carried out with passive traps (eg.
Malaise traps) that can collect thousands of specimens per sample. The identification of …
Malaise traps) that can collect thousands of specimens per sample. The identification of …