[HTML][HTML] DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work

H Weigand, AJ Beermann, F Čiampor, FO Costa… - Science of the Total …, 2019 - Elsevier
Effective identification of species using short DNA fragments (DNA barcoding and DNA
metabarcoding) requires reliable sequence reference libraries of known taxa. Both …

Diet tracing in ecology: Method comparison and selection

JM Nielsen, EL Clare, B Hayden… - Methods in Ecology …, 2018 - Wiley Online Library
Determining diet is a key prerequisite for understanding species interactions, food web
structure and ecological dynamics. In recent years, there has been considerable …

[HTML][HTML] Towards a multisensor station for automated biodiversity monitoring

JW Wägele, P Bodesheim, SJ Bourlat, J Denzler… - Basic and Applied …, 2022 - Elsevier
Rapid changes of the biosphere observed in recent years are caused by both small and
large scale drivers, like shifts in temperature, transformations in land-use, or changes in the …

A general species delimitation method with applications to phylogenetic placements

J Zhang, P Kapli, P Pavlidis, A Stamatakis - Bioinformatics, 2013 - academic.oup.com
Motivation: Sequence-based methods to delimit species are central to DNA taxonomy,
microbial community surveys and DNA metabarcoding studies. Current approaches either …

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

N Puillandre, A Lambert, S Brouillet… - Molecular ecology, 2012 - Wiley Online Library
Within uncharacterized groups, DNA barcodes, short DNA sequences that are present in a
wide range of species, can be used to assign organisms into species. We propose an …

Who is eating what: diet assessment using next generation sequencing

F Pompanon, BE Deagle, WOC Symondson… - Molecular …, 2012 - Wiley Online Library
The analysis of food webs and their dynamics facilitates understanding of the mechanistic
processes behind community ecology and ecosystem functions. Having accurate techniques …

From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity

ME Cristescu - Trends in ecology & evolution, 2014 - cell.com
DNA-based species identification, known as barcoding, transformed the traditional approach
to the study of biodiversity science. The field is transitioning from barcoding individuals to …

Towards exhaustive community ecology via DNA metabarcoding

GF Ficetola, P Taberlet - Molecular Ecology, 2023 - Wiley Online Library
Exhaustive biodiversity data, covering all the taxa in an environment, would be fundamental
to understand how global changes influence organisms living at different trophic levels, and …

DNA barcoding for ecologists

A Valentini, F Pompanon, P Taberlet - Trends in ecology & evolution, 2009 - cell.com
DNA barcoding–taxon identification using a standardized DNA region–has received much
attention recently, and is being further developed through an international initiative. We …

Power and limitations of the chloroplast trn L (UAA) intron for plant DNA barcoding

P Taberlet, E Coissac, F Pompanon… - Nucleic acids …, 2007 - academic.oup.com
DNA barcoding should provide rapid, accurate and automatable species identifications by
using a standardized DNA region as a tag. Based on sequences available in GenBank and …