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[HTML][HTML] DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work
Effective identification of species using short DNA fragments (DNA barcoding and DNA
metabarcoding) requires reliable sequence reference libraries of known taxa. Both …
metabarcoding) requires reliable sequence reference libraries of known taxa. Both …
Diet tracing in ecology: Method comparison and selection
Determining diet is a key prerequisite for understanding species interactions, food web
structure and ecological dynamics. In recent years, there has been considerable …
structure and ecological dynamics. In recent years, there has been considerable …
[HTML][HTML] Towards a multisensor station for automated biodiversity monitoring
Rapid changes of the biosphere observed in recent years are caused by both small and
large scale drivers, like shifts in temperature, transformations in land-use, or changes in the …
large scale drivers, like shifts in temperature, transformations in land-use, or changes in the …
A general species delimitation method with applications to phylogenetic placements
Motivation: Sequence-based methods to delimit species are central to DNA taxonomy,
microbial community surveys and DNA metabarcoding studies. Current approaches either …
microbial community surveys and DNA metabarcoding studies. Current approaches either …
ABGD, Automatic Barcode Gap Discovery for primary species delimitation
Within uncharacterized groups, DNA barcodes, short DNA sequences that are present in a
wide range of species, can be used to assign organisms into species. We propose an …
wide range of species, can be used to assign organisms into species. We propose an …
Who is eating what: diet assessment using next generation sequencing
The analysis of food webs and their dynamics facilitates understanding of the mechanistic
processes behind community ecology and ecosystem functions. Having accurate techniques …
processes behind community ecology and ecosystem functions. Having accurate techniques …
From barcoding single individuals to metabarcoding biological communities: towards an integrative approach to the study of global biodiversity
ME Cristescu - Trends in ecology & evolution, 2014 - cell.com
DNA-based species identification, known as barcoding, transformed the traditional approach
to the study of biodiversity science. The field is transitioning from barcoding individuals to …
to the study of biodiversity science. The field is transitioning from barcoding individuals to …
Towards exhaustive community ecology via DNA metabarcoding
Exhaustive biodiversity data, covering all the taxa in an environment, would be fundamental
to understand how global changes influence organisms living at different trophic levels, and …
to understand how global changes influence organisms living at different trophic levels, and …
DNA barcoding for ecologists
DNA barcoding–taxon identification using a standardized DNA region–has received much
attention recently, and is being further developed through an international initiative. We …
attention recently, and is being further developed through an international initiative. We …
Power and limitations of the chloroplast trn L (UAA) intron for plant DNA barcoding
DNA barcoding should provide rapid, accurate and automatable species identifications by
using a standardized DNA region as a tag. Based on sequences available in GenBank and …
using a standardized DNA region as a tag. Based on sequences available in GenBank and …