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Molecular factors of ice growth inhibition for hyperactive and globular antifreeze proteins: Insights from molecular dynamics simulation
The molecular mechanism behind the ice growth inhibition by antifreeze proteins (AFPs) is
yet to be understood completely. Also, what physical parameters differentiate between the …
yet to be understood completely. Also, what physical parameters differentiate between the …
Structural characteristics of low-density environments in liquid water
The existence of two structural forms in liquid water has been a point of discussion for a long
time. A phase transition between these two forms of liquid water has been proposed based …
time. A phase transition between these two forms of liquid water has been proposed based …
Preferential ordering and organization of hydration water favor nucleation of ice by ice-nucleating proteins over antifreeze proteins
Bacteria containing ice-nucleating proteins (INPs) evolved in nature to nucleate ice at the
high sub-zero ambiance. The ability of the INPs to induce order in the hydration layer and …
high sub-zero ambiance. The ability of the INPs to induce order in the hydration layer and …
Genetic algorithm approach for the optimization of protein antifreeze activity using molecular simulations
DJ Kozuch, FH Stillinger… - Journal of Chemical …, 2020 - ACS Publications
Antifreeze proteins (AFPs) are of much interest for their ability to inhibit ice growth at low
concentrations. In this work, we present a genetic algorithm for the in silico design of AFP …
concentrations. In this work, we present a genetic algorithm for the in silico design of AFP …
Ordered hydration layer mediated ice adsorption of a globular antifreeze protein: mechanistic insight
The ice/water interface recognition mechanism of antifreeze proteins (AFPs) is highly
contentious. Conventionally, protein adsorption on a solid surface is primarily driven by the …
contentious. Conventionally, protein adsorption on a solid surface is primarily driven by the …
Factors promoting the formation of clathrate-like ordering of water in biomolecular structure at ambient temperature and pressure
Clathrate hydrate forms when a hydrophobic molecule is entrapped inside a water cage or
cavity. Although biomolecular structures also have hydrophobic patches, clathrate-like water …
cavity. Although biomolecular structures also have hydrophobic patches, clathrate-like water …
Structural investigation, computational analysis, and theoretical cryoprotectant approach of antifreeze protein type IV mutants
Antifreeze proteins (AFPs) have unique features to sustain life in sub-zero environments due
to ice recrystallization inhibition (IRI) and thermal hysteresis (TH). AFPs are in demand as …
to ice recrystallization inhibition (IRI) and thermal hysteresis (TH). AFPs are in demand as …
Cold denaturation induced helix-to-helix transition and its implication to activity of helical antifreeze protein
Study of cold denaturation is relevant for understanding the freeze tolerant activity of
organism at sub-zero environment. The proteins responsible for the survival of these …
organism at sub-zero environment. The proteins responsible for the survival of these …
Differential hydration of ice‐binding surface of globular and hyperactive antifreeze proteins
Like hyperactive antifreeze proteins (AFPs), globular AFPs also illustrate thermal hysteresis
by specific binding to ice. The ice‐binding surface (IBS) topology and residue preferences …
by specific binding to ice. The ice‐binding surface (IBS) topology and residue preferences …
[PDF][PDF] Antifreeze proteins: an unusual tale of structural evolution, hydration and function
Organisms living in extreme cold conditions find a unique solution for cold adaptation. They
produce a group of proteins, called antifreeze proteins (AFPs) which cause depression of …
produce a group of proteins, called antifreeze proteins (AFPs) which cause depression of …