SpliceAI-visual: a free online tool to improve SpliceAI splicing variant interpretation

JM de Sainte Agathe, M Filser, B Isidor, T Besnard… - Human Genomics, 2023 - Springer
SpliceAI is an open-source deep learning splicing prediction algorithm that has
demonstrated in the past few years its high ability to predict splicing defects caused by DNA …

ErbB receptors and cancer

Z Wang - ErbB receptor signaling: methods and protocols, 2017 - Springer
The ErbB receptor family, also known as the EGF receptor family or type I receptor family,
includes the epidermal growth factor (EGF) receptor (EGFR) or ErbB1/Her1, ErbB2/Her2 …

Deep intronic mutations and human disease

R Vaz-Drago, N Custódio, M Carmo-Fonseca - Human genetics, 2017 - Springer
Next-generation sequencing has revolutionized clinical diagnostic testing. Yet, for a
substantial proportion of patients, sequence information restricted to exons and exon–intron …

Emerging applications of machine learning in genomic medicine and healthcare

N Chafai, L Bonizzi, S Botti… - Critical Reviews in Clinical …, 2024 - Taylor & Francis
The integration of artificial intelligence technologies has propelled the progress of clinical
and genomic medicine in recent years. The significant increase in computing power has …

Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Lessons from non-canonical splicing

CR Sibley, L Blazquez, J Ule - Nature Reviews Genetics, 2016 - nature.com
Recent improvements in experimental and computational techniques that are used to study
the transcriptome have enabled an unprecedented view of RNA processing, revealing many …

Intron retention is a widespread mechanism of tumor-suppressor inactivation

H Jung, D Lee, J Lee, D Park, YJ Kim, WY Park… - Nature …, 2015 - nature.com
A substantial fraction of disease-causing mutations are pathogenic through aberrant
splicing. Although genome profiling studies have identified somatic single-nucleotide …

Machine learning in genomic medicine: a review of computational problems and data sets

MKK Leung, A Delong, B Alipanahi… - Proceedings of the …, 2015 - ieeexplore.ieee.org
In this paper, we provide an introduction to machine learning tasks that address important
problems in genomic medicine. One of the goals of genomic medicine is to determine how …

Blood RNA analysis can increase clinical diagnostic rate and resolve variants of uncertain significance

HA Wai, J Lord, M Lyon, A Gunning, H Kelly… - Genetics in …, 2020 - nature.com
Purpose Diagnosis of genetic disorders is hampered by large numbers of variants of
uncertain significance (VUSs) identified through next-generation sequencing. Many such …

Detection of aberrant splicing events in RNA-seq data using FRASER

C Mertes, IF Scheller, VA Yépez, MH Çelik… - Nature …, 2021 - nature.com
Aberrant splicing is a major cause of rare diseases. However, its prediction from genome
sequence alone remains in most cases inconclusive. Recently, RNA sequencing has proven …