Covering: up to 2021 Metagenomics has yielded massive amounts of sequencing data
offering a glimpse into the biosynthetic potential of the uncultivated microbial majority. While …

A large body of research in supervised learning deals with the analysis of single-label data,
where training examples are associated with a single label λ from a set of disjoint labels L …

This paper studies unsupervised/self-supervised whole-graph representation learning,
which is critical in many tasks such as molecule properties prediction in drug and material …

Eukaryotic filamentous plant pathogens secrete effector proteins that modulate the host cell
to facilitate infection. Computational effector candidate identification and subsequent …

1O2 (singlet oxygen) is a reactive O2 species produced from triplet excited chlorophylls in
the chloroplasts, especially when plants are exposed to excess light energy. Similarly to …

In this survey we discuss the task of hierarchical classification. The literature about this field
is scattered across very different application domains and for that reason research in one …

The Biological Networks Gene Ontology tool (BiNGO) is an open-source Java tool to
determine which Gene Ontology (GO) terms are significantly overrepresented in a set of …

Functional annotation of novel sequence data is a primary requirement for the utilization of
functional genomics approaches in plant research. In this paper, we describe the Blast2GO …

The topological landscape of molecular or functional interaction networks provides a rich
source of information for inferring functional patterns of genes or proteins. However, a …

The fungus Fusarium fujikuroi causes “bakanae” disease of rice due to its ability to produce
gibberellins (GAs), but it is also known for producing harmful mycotoxins. However, the …