Extreme environments offer an unprecedented opportunity to understand microbial eukaryotic ecology, evolution, and genome biology
Research in extreme environments has substantially expanded our understanding of the
ecology and evolution of life on Earth, but a major group of organisms has been largely …
ecology and evolution of life on Earth, but a major group of organisms has been largely …
[HTML][HTML] Computational methods for 16S metabarcoding studies using Nanopore sequencing data
Assessment of bacterial diversity through sequencing of 16S ribosomal RNA (16S rRNA)
genes has been an approach widely used in environmental microbiology, particularly since …
genes has been an approach widely used in environmental microbiology, particularly since …
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
Background One of the main challenges in metagenomics is the identification of
microorganisms in clinical and environmental samples. While an extensive and …
microorganisms in clinical and environmental samples. While an extensive and …
Making and sequencing heavily multiplexed, high-throughput 16S ribosomal RNA gene amplicon libraries using a flexible, two-stage PCR protocol
A Naqib, S Poggi, W Wang, M Hyde… - … analysis: Methods and …, 2018 - Springer
Deep sequencing of polymerase chain reaction (PCR)-amplified small subunit (16S or 18S)
ribosomal RNA (rRNA) genes fragments is commonly employed to characterize the …
ribosomal RNA (rRNA) genes fragments is commonly employed to characterize the …
Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect …
Abstract Background Oxford Nanopore Technologies (ONT) offers an accessible platform for
long-read sequencing, which improves the reconstruction of genomes and helps to resolve …
long-read sequencing, which improves the reconstruction of genomes and helps to resolve …
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes
Metagenomic samples are snapshots of complex ecosystems at work. They comprise
hundreds of known and unknown species, contain multiple strain variants and vary greatly …
hundreds of known and unknown species, contain multiple strain variants and vary greatly …
[HTML][HTML] Loop-mediated isothermal amplification detection of SARS-CoV-2 and myriad other applications
KJM Moore, J Cahill, G Aidelberg… - Journal of …, 2021 - ncbi.nlm.nih.gov
As the second year of the COVID-19 pandemic begins, it remains clear that a massive
increase in the ability to test for SARS-CoV-2 infections in a myriad of settings is critical to …
increase in the ability to test for SARS-CoV-2 infections in a myriad of settings is critical to …
The application of metagenomics to study microbial communities and develop desirable traits in fermented foods
The microbial communities present within fermented foods are diverse and dynamic,
producing a variety of metabolites responsible for the fermentation processes, imparting …
producing a variety of metabolites responsible for the fermentation processes, imparting …
Metagenomic analysis of geothermal water reservoir sites exploring carbohydrate-related thermozymes
Hot springs are geothermally heated underground water that create a natural habitat for
diverse thermophilic microorganisms. The study presents a comprehensive investigation of …
diverse thermophilic microorganisms. The study presents a comprehensive investigation of …
Finding a needle in a haystack: Bacteroides fragilis polysaccharide A as the archetypical symbiosis factor
Starting from birth, all animals develop a symbiotic relationship with their resident
microorganisms that benefits both the microbe and the host. Recent advances in technology …
microorganisms that benefits both the microbe and the host. Recent advances in technology …