Effective population size and patterns of molecular evolution and variation

B Charlesworth - Nature Reviews Genetics, 2009 - nature.com
The effective size of a population, N e, determines the rate of change in the composition of a
population caused by genetic drift, which is the random sampling of genetic variants in a …

Genome-wide association studies in diverse populations

NA Rosenberg, L Huang, EM Jewett… - Nature Reviews …, 2010 - nature.com
Genome-wide association (GWA) studies have identified a large number of SNPs
associated with disease phenotypes. As most GWA studies have been performed in …

A map of recent positive selection in the human genome

BF Voight, S Kudaravalli, X Wen, JK Pritchard - PLoS biology, 2006 - journals.plos.org
The identification of signals of very recent positive selection provides information about the
adaptation of modern humans to local conditions. We report here on a genome-wide scan …

Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data

RN Gutenkunst, RD Hernandez, SH Williamson… - PLoS …, 2009 - journals.plos.org
Demographic models built from genetic data play important roles in illuminating prehistorical
events and serving as null models in genome scans for selection. We introduce an inference …

Early farmers from across Europe directly descended from Neolithic Aegeans

Z Hofmanová, S Kreutzer… - Proceedings of the …, 2016 - National Acad Sciences
Farming and sedentism first appeared in southwestern Asia during the early Holocene and
later spread to neighboring regions, including Europe, along multiple dispersal routes …

The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation

JK Pritchard, JK Pickrell, G Coop - Current biology, 2010 - cell.com
There has long been interest in understanding the genetic basis of human adaptation. To
what extent are phenotypic differences among human populations driven by natural …

abc: an R package for approximate Bayesian computation (ABC)

K Csilléry, O François, MGB Blum - Methods in ecology and …, 2012 - Wiley Online Library
Many recent statistical applications involve inference under complex models, where it is
computationally prohibitive to calculate likelihoods but possible to simulate data …

Using environmental correlations to identify loci underlying local adaptation

G Coop, D Witonsky, A Di Rienzo, JK Pritchard - Genetics, 2010 - academic.oup.com
Loci involved in local adaptation can potentially be identified by an unusual correlation
between allele frequencies and important ecological variables or by extreme allele …

Bayesian inference of ancient human demography from individual genome sequences

I Gronau, MJ Hubisz, B Gulko, CG Danko, A Siepel - Nature genetics, 2011 - nature.com
Whole-genome sequences provide a rich source of information about human evolution.
Here we describe an effort to estimate key evolutionary parameters based on the whole …

The great human expansion

BM Henn, LL Cavalli-Sforza… - Proceedings of the …, 2012 - National Acad Sciences
Genetic and paleoanthropological evidence is in accord that today's human population is
the result of a great demic (demographic and geographic) expansion that began …