[HTML][HTML] Microglia states and nomenclature: A field at its crossroads

RC Paolicelli, A Sierra, B Stevens, ME Tremblay… - Neuron, 2022 - cell.com
Microglial research has advanced considerably in recent decades yet has been constrained
by a rolling series of dichotomies such as" resting versus activated" and" M1 versus M2." …

Single‐cell mass spectrometry approaches to explore cellular heterogeneity

L Zhang, A Vertes - Angewandte Chemie International Edition, 2018 - Wiley Online Library
Compositional diversity is a fundamental property in cell populations. Single‐cell analysis
promises new insight into this cellular heterogeneity on the genomic, transcriptomic …

Human microglia show unique transcriptional changes in Alzheimer's disease

KE Prater, KJ Green, S Mamde, W Sun, A Cochoit… - Nature Aging, 2023 - nature.com
Microglia, the innate immune cells of the brain, influence Alzheimer's disease (AD)
progression and are potential therapeutic targets. However, microglia exhibit diverse …

SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation

H Matsumoto, H Kiryu, C Furusawa, MSH Ko… - …, 2017 - academic.oup.com
Motivation The analysis of RNA-Seq data from individual differentiating cells enables us to
reconstruct the differentiation process and the degree of differentiation (in pseudo-time) of …

Detecting signatures of selection on gene expression

PD Price, DH Palmer Droguett, JA Taylor… - Nature Ecology & …, 2022 - nature.com
A substantial amount of phenotypic diversity results from changes in gene expression levels
and patterns. Understanding how the transcriptome evolves is therefore a key priority in …

GPCRomics: an approach to discover GPCR drug targets

PA Insel, K Sriram, MW Gorr, SZ Wiley… - Trends in …, 2019 - cell.com
G protein-coupled receptors (GPCRs) are targets for∼ 35% of approved drugs but only∼
15% of the∼ 800 human GPCRs are currently such targets. GPCRomics, the use of …

Neural stem cell metabolism revisited: a critical role for mitochondria

V Scandella, F Petrelli, DL Moore, SMG Braun… - Trends in Endocrinology …, 2023 - cell.com
Metabolism has emerged as a key regulator of stem cell behavior. Mitochondria are crucial
metabolic organelles that are important for differentiated cells, yet considered less so for …

Atopic dermatitis displays stable and dynamic skin transcriptome signatures

L Möbus, E Rodriguez, I Harder, D Stölzl… - Journal of Allergy and …, 2021 - Elsevier
Background Skin transcriptome studies in atopic dermatitis (AD) showed broad
dysregulation as well as “improvement” under therapy. These observations were mainly …

Extracellular vesicular analysis of glypican 1 mRNA and protein for pancreatic cancer diagnosis and prognosis

H Li, CL Chiang, KJ Kwak, X Wang, S Doddi… - Advanced …, 2024 - Wiley Online Library
Detecting pancreatic duct adenocarcinoma (PDAC) in its early stages and predicting late‐
stage patient prognosis undergoing chemotherapy is challenging. This work shows that the …

[HTML][HTML] Data-independent acquisition: A milestone and prospect in clinical mass spectrometry-based proteomics

K Fröhlich, M Fahrner, E Brombacher… - Molecular & Cellular …, 2024 - Elsevier
Data-independent acquisition (DIA) has revolutionized the field of mass spectrometry (MS)-
based proteomics over the past few years. DIA stands out for its ability to systematically …