Genetics and genomics of moso bamboo (Phyllostachys edulis): Current status, future challenges, and biotechnological opportunities toward a sustainable bamboo …

M Ramakrishnan, K Yrjälä, KK Vinod… - Food and Energy …, 2020 - Wiley Online Library
Sustainable goals for contemporary world seek viable solutions for interconnected
challenges, particularly in the fields of food and energy security and climate change. We …

Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches

EA Zimmer, J Wen - Journal of Systematics and Evolution, 2015 - Wiley Online Library
Single and low copy nuclear genes offer a larger number of, and more rapidly evolving,
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

DAR Eaton - Bioinformatics, 2014 - academic.oup.com
Motivation: Restriction-site–associated genomic markers are a powerful tool for investigating
evolutionary questions at the population level, but are limited in their utility at deeper …

Unforeseen consequences of excluding missing data from next-generation sequences: simulation study of RAD sequences

H Huang, LL Knowles - Systematic biology, 2016 - academic.oup.com
There is a lack of consensus on how next-generation sequence (NGS) data should be
considered for phylogenetic and phylogeographic estimates, with some studies excluding …

Genoty**-by-sequencing as a tool to infer phylogeny and ancestral hybridization: a case study in Carex (Cyperaceae)

M Escudero, DAR Eaton, M Hahn, AL Hipp - Molecular Phylogenetics and …, 2014 - Elsevier
Determining phylogenetic relationships among very closely related species has remained a
challenge for evolutionary biologists due to interlocus phylogenetic discordance and the …

Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing

H Yang, CL Wei, HW Liu, JL Wu, ZG Li, L Zhang… - PLoS …, 2016 - journals.plos.org
Tea is one of the most popular beverages across the world and is made exclusively from
cultivars of Camellia sinensis. Many wild relatives of the genus Camellia that are closely …

Phylogeny of Zebrafish, a “Model Species,” within Danio, a “Model Genus”

BM McCluskey, JH Postlethwait - Molecular biology and …, 2015 - academic.oup.com
Zebrafish (Danio rerio) is an important model for vertebrate development, genomics,
physiology, behavior, toxicology, and disease. Additionally, work on numerous Danio …

Molecular markers delimit cryptic species in Ceratocystis sensu stricto

A Fourie, MJ Wingfield, BD Wingfield, I Barnes - Mycological Progress, 2015 - Springer
Ceratocystis sensu stricto is a genus of closely related fungi that are mostly plant pathogens.
Morphological variation between species in this genus is limited, and species delineation is …

High-density genetic map construction and QTLs analysis of grain yield-related traits in Sesame (Sesamum indicum L.) based on RAD-Seq techonology

K Wu, H Liu, M Yang, Y Tao, H Ma, W Wu, Y Zuo… - BMC plant biology, 2014 - Springer
Abstract Background Sesame (Sesamum indicum L., 2n= 26) is an important oilseed crop
with an estimated genome size of 369 Mb. The genetic basis, including the number and …

Reconsidering connectivity in the sub‐A ntarctic

KL Moon, SL Chown, CI Fraser - Biological Reviews, 2017 - Wiley Online Library
Extreme and remote environments provide useful settings to test ideas about the ecological
and evolutionary drivers of biological diversity. In the sub‐A ntarctic, isolation by geographic …