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Dynamics of DNA damage response proteins at DNA breaks: a focus on protein modifications
SE Polo, SP Jackson - Genes & development, 2011 - genesdev.cshlp.org
Genome integrity is constantly monitored by sophisticated cellular networks, collectively
termed the DNA damage response (DDR). A common feature of DDR proteins is their …
termed the DNA damage response (DDR). A common feature of DDR proteins is their …
Causes of genome instability
Genomes are transmitted faithfully from dividing cells to their offspring. Changes that occur
during DNA repair, chromosome duplication, and transmission or via recombination provide …
during DNA repair, chromosome duplication, and transmission or via recombination provide …
BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks
Precisely measuring the location and frequency of DNA double-strand breaks (DSBs) along
the genome is instrumental to understanding genomic fragility, but current methods are …
the genome is instrumental to understanding genomic fragility, but current methods are …
Map** nucleosome resolution chromosome folding in yeast by micro-C
We describe a Hi-C-based method, Micro-C, in which micrococcal nuclease is used instead
of restriction enzymes to fragment chromatin, enabling nucleosome resolution chromosome …
of restriction enzymes to fragment chromatin, enabling nucleosome resolution chromosome …
Nucleotide-resolution DNA double-strand break map** by next-generation sequencing
We present a genome-wide approach to map DNA double-strand breaks (DSBs) at
nucleotide resolution by a method we termed BLESS (direct in situ breaks labeling …
nucleotide resolution by a method we termed BLESS (direct in situ breaks labeling …
53BP1 nuclear bodies form around DNA lesions generated by mitotic transmission of chromosomes under replication stress
C Lukas, V Savic, S Bekker-Jensen, C Doil… - Nature cell …, 2011 - nature.com
Completion of genome duplication is challenged by structural and topological barriers that
impede progression of replication forks. Although this can seriously undermine genome …
impede progression of replication forks. Although this can seriously undermine genome …
R-loop-mediated genomic instability is caused by impairment of replication fork progression
W Gan, Z Guan, J Liu, T Gui, K Shen… - Genes & …, 2011 - genesdev.cshlp.org
Transcriptional R loops are anomalous RNA: DNA hybrids that have been detected in
organisms from bacteria to humans. These structures have been shown in eukaryotes to …
organisms from bacteria to humans. These structures have been shown in eukaryotes to …
Everything You Ever Wanted to Know About Saccharomyces cerevisiae Telomeres: Beginning to End
RJ Wellinger, VA Zakian - Genetics, 2012 - academic.oup.com
The mechanisms that maintain the stability of chromosome ends have broad impact on
genome integrity in all eukaryotes. Budding yeast is a premier organism for telomere …
genome integrity in all eukaryotes. Budding yeast is a premier organism for telomere …
High-resolution chromatin dynamics during a yeast stress response
Covalent histone modifications are highly conserved and play multiple roles in eukaryotic
transcription regulation. Here, we mapped 26 histone modifications genome-wide in …
transcription regulation. Here, we mapped 26 histone modifications genome-wide in …
Off-target analysis in gene editing and applications for clinical translation of CRISPR/Cas9 in HIV-1 therapy
As genome-editing nucleases move toward broader clinical applications, the need to define
the limits of their specificity and efficiency increases. A variety of approaches for nuclease …
the limits of their specificity and efficiency increases. A variety of approaches for nuclease …