Single-cell genomics in plants: current state, future directions, and hurdles to overcome
JT Cuperus - Plant Physiology, 2022 - academic.oup.com
Single-cell genomics has the potential to revolutionize the study of plant development and
tissue-specific responses to environmental stimuli by revealing heretofore unknown players …
tissue-specific responses to environmental stimuli by revealing heretofore unknown players …
A systematic evaluation of single-cell RNA-sequencing imputation methods
Background The rapid development of single-cell RNA-sequencing (scRNA-seq)
technologies has led to the emergence of many methods for removing systematic technical …
technologies has led to the emergence of many methods for removing systematic technical …
Targeted Perturb-seq enables genome-scale genetic screens in single cells
D Schraivogel, AR Gschwind, JH Milbank, DR Leonce… - Nature …, 2020 - nature.com
The transcriptome contains rich information on molecular, cellular and organismal
phenotypes. However, experimental and statistical limitations constrain sensitivity and …
phenotypes. However, experimental and statistical limitations constrain sensitivity and …
The application of single‐cell RNA sequencing in vaccinology
Single‐cell RNA sequencing allows highly detailed profiling of cellular immune responses
from limited‐volume samples, advancing prospects of a new era of systems immunology …
from limited‐volume samples, advancing prospects of a new era of systems immunology …
Antigen identification and high-throughput interaction map** by reprogramming viral entry
Deciphering immune recognition is critical for understanding a broad range of diseases and
for the development of effective vaccines and immunotherapies. Efforts to do so are limited …
for the development of effective vaccines and immunotherapies. Efforts to do so are limited …
[HTML][HTML] Inflation-collapse dynamics drive patterning and morphogenesis in intestinal organoids
How stem cells self-organize to form structured tissues is an unsolved problem. Intestinal
organoids offer a model of self-organization as they generate stem cell zones (SCZs) of …
organoids offer a model of self-organization as they generate stem cell zones (SCZs) of …
Method of moments framework for differential expression analysis of single-cell RNA sequencing data
Differential expression analysis of single-cell RNA sequencing (scRNA-seq) data is central
for characterizing how experimental factors affect the distribution of gene expression …
for characterizing how experimental factors affect the distribution of gene expression …
SCITO-seq: single-cell combinatorial indexed cytometry sequencing
The development of DNA-barcoded antibodies to tag cell surface molecules has enabled
the use of droplet-based single-cell sequencing (dsc-seq) to profile protein abundances …
the use of droplet-based single-cell sequencing (dsc-seq) to profile protein abundances …
A robust and scalable graph neural network for accurate single-cell classification
Single-cell RNA sequencing (scRNA-seq) techniques provide high-resolution data on
cellular heterogeneity in diverse tissues, and a critical step for the data analysis is cell type …
cellular heterogeneity in diverse tissues, and a critical step for the data analysis is cell type …
Tools and concepts for interrogating and defining cellular identity
Defining the mechanisms that generate specialized cell types and coordinate their functions
is critical for understanding organ development and renewal. New tools and discoveries are …
is critical for understanding organ development and renewal. New tools and discoveries are …