Alternative splicing regulatory networks: functions, mechanisms, and evolution

J Ule, BJ Blencowe - Molecular cell, 2019 - cell.com
High-throughput sequencing-based methods and their applications in the study of
transcriptomes have revolutionized our understanding of alternative splicing. Networks of …

Splicing mutations in human genetic disorders: examples, detection, and confirmation

A Anna, G Monika - Journal of applied genetics, 2018 - Springer
Precise pre-mRNA splicing, essential for appropriate protein translation, depends on the
presence of consensus “cis” sequences that define exon-intron boundaries and regulatory …

Predicting splicing from primary sequence with deep learning

K Jaganathan, SK Panagiotopoulou, JF McRae… - Cell, 2019 - cell.com
The splicing of pre-mRNAs into mature transcripts is remarkable for its precision, but the
mechanisms by which the cellular machinery achieves such specificity are incompletely …

Circular RNA cSMARCA5 inhibits growth and metastasis in hepatocellular carcinoma

J Yu, Q Xu, Z Wang, Y Yang, L Zhang, J Ma, S Sun… - Journal of …, 2018 - Elsevier
Background & Aims In recent years, circular RNAs (circRNAs) have been shown to have
critical regulatory roles in cancer biology. However, the contributions of circRNAs to …

Diverse alternative back-splicing and alternative splicing landscape of circular RNAs

XO Zhang, R Dong, Y Zhang, JL Zhang, Z Luo… - Genome …, 2016 - genome.cshlp.org
Circular RNAs (circRNAs) derived from back-spliced exons have been widely identified as
being co-expressed with their linear counterparts. A single gene locus can produce multiple …

[HTML][HTML] Complementary sequence-mediated exon circularization

XO Zhang, HB Wang, Y Zhang, X Lu, LL Chen, L Yang - Cell, 2014 - cell.com
Exon circularization has been identified from many loci in mammals, but the detailed
mechanism of its biogenesis has remained elusive. By using genome-wide approaches and …

Deep intronic mutations and human disease

R Vaz-Drago, N Custódio, M Carmo-Fonseca - Human genetics, 2017 - Springer
Next-generation sequencing has revolutionized clinical diagnostic testing. Yet, for a
substantial proportion of patients, sequence information restricted to exons and exon–intron …

Mechanisms and regulation of alternative pre-mRNA splicing

Y Lee, DC Rio - Annual review of biochemistry, 2015 - annualreviews.org
Precursor messenger RNA (pre-mRNA) splicing is a critical step in the posttranscriptional
regulation of gene expression, providing significant expansion of the functional proteome of …

Context-dependent control of alternative splicing by RNA-binding proteins

XD Fu, M Ares Jr - Nature Reviews Genetics, 2014 - nature.com
Sequence-specific RNA-binding proteins (RBPs) bind to pre-mRNA to control alternative
splicing, but it is not yet possible to read the'splicing code'that dictates splicing regulation on …

[HTML][HTML] Circular intronic long noncoding RNAs

Y Zhang, XO Zhang, T Chen, JF **ang, QF Yin… - Molecular cell, 2013 - cell.com
We describe the identification and characterization of circular intronic long noncoding RNAs
in human cells, which accumulate owing to a failure in debranching. The formation of such …