Chloroplast genomes: diversity, evolution, and applications in genetic engineering

H Daniell, CS Lin, M Yu, WJ Chang - Genome biology, 2016 - Springer
Chloroplasts play a crucial role in sustaining life on earth. The availability of over 800
sequenced chloroplast genomes from a variety of land plants has enhanced our …

Plant DNA barcoding: from gene to genome

X Li, Y Yang, RJ Henry, M Rossetto, Y Wang… - Biological …, 2015 - Wiley Online Library
ABSTRACT DNA barcoding is currently a widely used and effective tool that enables rapid
and accurate identification of plant species; however, none of the available loci work across …

Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs

JB Yang, DZ Li, HT Li - Molecular ecology resources, 2014 - Wiley Online Library
Chloroplast genomes supply indispensable information that helps improve the phylogenetic
resolution and even as organelle‐scale barcodes. Next‐generation sequencing …

The chloroplast genome evolution of Venus slipper (Paphiopedilum): IR expansion, SSC contraction, and highly rearranged SSC regions

YY Guo, JX Yang, MZ Bai, GQ Zhang, ZJ Liu - BMC Plant Biology, 2021 - Springer
Background Paphiopedilum is the largest genus of slipper orchids. Previous studies showed
that the phylogenetic relationships of this genus are not well resolved, and sparse taxon …

Molecular evolution of chloroplast genomes of orchid species: insights into phylogenetic relationship and adaptive evolution

WL Dong, RN Wang, NY Zhang, WB Fan… - International Journal of …, 2018 - mdpi.com
Orchidaceae is the 3rd largest family of angiosperms, an evolved young branch of
monocotyledons. This family contains a number of economically-important horticulture and …

Testing genome skimming for species discrimination in the large and taxonomically difficult genus Rhododendron

CN Fu, ZQ Mo, JB Yang, J Cai, LJ Ye… - Molecular Ecology …, 2022 - Wiley Online Library
Standard plant DNA barcodes based on 2–3 plastid regions, and nrDNA ITS show variable
levels of resolution, and fail to discriminate among species in many plant groups. Genome …

DNA barcoding of Cymbidium by genome skimming: Call for next‐generation nuclear barcodes

L Zhang, YW Huang, JL Huang, JD Ya… - Molecular Ecology …, 2023 - Wiley Online Library
Cymbidium is an orchid genus that has undergone rapid radiation and has high ornamental,
economic, ecological and cultural importance, but its classification based on morphology is …

Plastome evolution and phylogeny of Orchidaceae, with 24 new sequences

YK Kim, S Jo, SH Cheon, MJ Joo, JR Hong… - Frontiers in Plant …, 2020 - frontiersin.org
In order to understand the evolution of the orchid plastome, we annotated and compared
124 complete plastomes of Orchidaceae representing all the major lineages in their …

Role of genomics in promoting the utilization of plant genetic resources in genebanks

PW Wambugu, MN Ndjiondjop… - Briefings in functional …, 2018 - academic.oup.com
Global efforts have seen the world's plant genetic resources (PGRs) conserved in about
1625 germ plasm repositories. Utility of these resources is important in increasing the …

The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family

CS Lin, JJW Chen, YT Huang, MT Chan, H Daniell… - Scientific reports, 2015 - nature.com
Abstract The NAD (P) H dehydrogenase complex is encoded by 11 ndh genes in plant
chloroplast (cp) genomes. However, ndh genes are truncated or deleted in some autotrophic …