Protein–protein interaction prediction methods: from docking-based to AI-based approaches
Abstract Protein–protein interactions (PPIs), such as protein–protein inhibitor, antibody–
antigen complex, and supercomplexes play diverse and important roles in cells. Recent …
antigen complex, and supercomplexes play diverse and important roles in cells. Recent …
Advancing structural biology through breakthroughs in AI
L Aithani, E Alcaide, S Bartunov, CDO Cooper… - Current Opinion in …, 2023 - Elsevier
The past century has witnessed an exponential increase in our atomic-level understanding
of molecular and cellular mechanisms from a structural perspective, with multiple landmark …
of molecular and cellular mechanisms from a structural perspective, with multiple landmark …
Efficient and accurate prediction of protein structure using RoseTTAFold2
AlphaFold2 and RoseTTAFold predict protein structures with very high accuracy despite
substantial architecture differences. We sought to develop an improved method combining …
substantial architecture differences. We sought to develop an improved method combining …
SymProFold: Structural prediction of symmetrical biological assemblies
C Buhlheller, T Sagmeister, C Grininger… - Nature …, 2024 - nature.com
Symmetry in nature often emerges from self-assembly processes and serves a wide range of
functions. Cell surface layers (S-layers) form symmetrical lattices on many bacterial and …
functions. Cell surface layers (S-layers) form symmetrical lattices on many bacterial and …
How the technologies behind self‐driving cars, social networks, ChatGPT, and DALL‐E2 are changing structural biology
M Bochtler - BioEssays, 2025 - Wiley Online Library
The performance of deep Neural Networks (NNs) in the text (ChatGPT) and image (DALL‐
E2) domains has attracted worldwide attention. Convolutional NNs (CNNs), Large …
E2) domains has attracted worldwide attention. Convolutional NNs (CNNs), Large …
[HTML][HTML] Rapid and accurate prediction of protein homo-oligomer symmetry with Seq2Symm
The majority of proteins must form higher-order assemblies to perform their biological
functions. Despite the importance of protein quaternary structure, there are few machine …
functions. Despite the importance of protein quaternary structure, there are few machine …
[CYTOWANIE][C] Prediction of protein complex structure: methods and progress
[CYTOWANIE][C] 蛋白质复合物结构预测: 方法与进展
黄鹤, 吴桐, 王闻达, **佳珊, 孙黛雯, 叶启威, 龚新奇 - 合成生物学, 2023