Overview of the matrisome—an inventory of extracellular matrix constituents and functions

RO Hynes, A Naba - Cold Spring Harbor perspectives in …, 2012 - cshperspectives.cshlp.org
Completion of genome sequences for many organisms allows a reasonably complete
definition of the complement of extracellular matrix (ECM) proteins. In mammals this “core …

[HTML][HTML] The tissue inhibitors of metalloproteinases (TIMPs): an ancient family with structural and functional diversity

K Brew, H Nagase - Biochimica et biophysica acta (BBA)-molecular cell …, 2010 - Elsevier
Tissue inhibitors of metalloproteinases (TIMPs) are widely distributed in the animal kingdom
and the human genome contains four paralogous genes encoding TIMPs 1 to 4. TIMPs were …

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

B Chalhoub, F Denoeud, S Liu, IAP Parkin, H Tang… - science, 2014 - science.org
Oilseed rape (Brassica napus L.) was formed~ 7500 years ago by hybridization between B.
rapa and B. oleracea, followed by chromosome doubling, a process known as …

Deeply conserved synteny and the evolution of metazoan chromosomes

O Simakov, J Bredeson, K Berkoff, F Marletaz… - Science …, 2022 - science.org
Animal genomes show networks of deeply conserved gene linkages whose phylogenetic
scope and chromosomal context remain unclear. Here, we report chromosome-scale …

Evolution by gene loss

R Albalat, C Cañestro - Nature Reviews Genetics, 2016 - nature.com
The recent increase in genomic data is revealing an unexpected perspective of gene loss as
a pervasive source of genetic variation that can cause adaptive phenotypic diversity. This …

The Cambrian conundrum: early divergence and later ecological success in the early history of animals

DH Erwin, M Laflamme, SM Tweedt, EA Sperling… - science, 2011 - science.org
Diverse bilaterian clades emerged apparently within a few million years during the early
Cambrian, and various environmental, developmental, and ecological causes have been …

Deeply conserved synteny resolves early events in vertebrate evolution

O Simakov, F Marlétaz, JX Yue, B O'Connell… - Nature ecology & …, 2020 - nature.com
Although it is widely believed that early vertebrate evolution was shaped by ancient whole-
genome duplications, the number, timing and mechanism of these events remain elusive …

Cell biology of cnidarian-dinoflagellate symbiosis

SK Davy, D Allemand, VM Weis - Microbiology and Molecular …, 2012 - Am Soc Microbiol
The symbiosis between cnidarians (eg, corals or sea anemones) and intracellular
dinoflagellate algae of the genus Symbiodinium is of immense ecological importance. In …

The amphioxus genome and the evolution of the chordate karyotype

NH Putnam, T Butts, DEK Ferrier, RF Furlong… - Nature, 2008 - nature.com
Abstract Lancelets ('amphioxus') are the modern survivors of an ancient chordate lineage,
with a fossil record dating back to the Cambrian period. Here we describe the structure and …

cGLRs are a diverse family of pattern recognition receptors in innate immunity

Y Li, KM Slavik, HC Toyoda, BR Morehouse… - Cell, 2023 - cell.com
Summary Cyclic GMP-AMP synthase (cGAS) is an enzyme in human cells that controls an
immune response to cytosolic DNA. Upon binding DNA, cGAS synthesizes a nucleotide …