Understanding nucleosome dynamics and their links to gene expression and DNA replication
WKM Lai, BF Pugh - Nature reviews Molecular cell biology, 2017 - nature.com
Advances in genomics technology have provided the means to probe myriad chromatin
interactions at unprecedented spatial and temporal resolution. This has led to a profound …
interactions at unprecedented spatial and temporal resolution. This has led to a profound …
New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?
The compaction of genomic DNA into chromatin has profound implications for the regulation
of key processes such as transcription, replication and DNA repair. Nucleosomes, the …
of key processes such as transcription, replication and DNA repair. Nucleosomes, the …
Controls of nucleosome positioning in the human genome
Nucleosomes are important for gene regulation because their arrangement on the genome
can control which proteins bind to DNA. Currently, few human nucleosomes are thought to …
can control which proteins bind to DNA. Currently, few human nucleosomes are thought to …
Disentangling the many layers of eukaryotic transcriptional regulation
Regulation of gene expression in eukaryotes is an extremely complex process. In this
review, we break down several critical steps, emphasizing new data and techniques that …
review, we break down several critical steps, emphasizing new data and techniques that …
Nucleosome structure (s) and stability: variations on a theme
Chromatin is a highly regulated, modular nucleoprotein complex that is central to many
processes in eukaryotes. The organization of DNA into nucleosomes and higher-order …
processes in eukaryotes. The organization of DNA into nucleosomes and higher-order …
CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters
One clear hallmark of mammalian promoters is the presence of CpG islands (CGIs) at more
than two-thirds of genes, whereas TATA boxes are only present at a minority of promoters …
than two-thirds of genes, whereas TATA boxes are only present at a minority of promoters …
Chromatin and DNA replication
DM MacAlpine, G Almouzni - Cold Spring Harbor …, 2013 - cshperspectives.cshlp.org
The size of a eukaryotic genome presents a unique challenge to the cell: package and
organize the DNA to fit within the confines of the nucleus while at the same time ensuring …
organize the DNA to fit within the confines of the nucleus while at the same time ensuring …
Precise genome-wide map** of single nucleosomes and linkers in vivo
We have developed a chemical cleavage method that allows precise map** of both single
nucleosomes and linkers genome-wide in budding yeast. We confirm that S. cerevisiae …
nucleosomes and linkers genome-wide in budding yeast. We confirm that S. cerevisiae …
Cis and trans acting factors involved in human cytomegalovirus experimental and natural latent infection of CD14 (+) monocytes and CD34 (+) cells
CC Rossetto, M Tarrant-Elorza, GS Pari - PLoS pathogens, 2013 - journals.plos.org
The parameters involved in human cytomegalovirus (HCMV) latent infection in CD14 (+) and
CD34 (+) cells remain poorly identified. Using next generation sequencing we deduced the …
CD34 (+) cells remain poorly identified. Using next generation sequencing we deduced the …
Predicting the human epigenome from DNA motifs
The epigenome is established and maintained by the site-specific recruitment of chromatin-
modifying enzymes and their cofactors. Identifying the cis elements that regulate epigenomic …
modifying enzymes and their cofactors. Identifying the cis elements that regulate epigenomic …