Ubiquitin-like protein conjugation: structures, chemistry, and mechanism

L Cappadocia, CD Lima - Chemical reviews, 2018 - ACS Publications
Ubiquitin-like proteins (Ubl's) are conjugated to target proteins or lipids to regulate their
activity, stability, subcellular localization, or macromolecular interactions. Similar to ubiquitin …

Mechanisms of autophagy

NN Noda, F Inagaki - Annual review of biophysics, 2015 - annualreviews.org
The formation of the autophagosome, a landmark event in autophagy, is accomplished by
the concerted actions of Atg proteins. The initial step of starvation-induced autophagy in …

Phosphorylation of the mitochondrial autophagy receptor Nix enhances its interaction with LC3 proteins

VV Rogov, H Suzuki, M Marinković, V Lang, R Kato… - Scientific reports, 2017 - nature.com
The mitophagy receptor Nix interacts with LC3/GABARAP proteins, targeting mitochondria
into autophagosomes for degradation. Here we present evidence for phosphorylation-driven …

Structure and function of the ULK1 complex in autophagy

MG Lin, JH Hurley - Current opinion in cell biology, 2016 - Elsevier
The ULK1 complex initiates autophagosome formation, linking cellular nutrient status to
downstream events in autophagy. Recent work suggests that the ULK1 complex might also …

[HTML][HTML] History of the selective autophagy research: how did it begin and where does it stand today?

V Kirkin - Journal of molecular biology, 2020 - Elsevier
Autophagy, self-eating, is a pivotal catabolic mechanism that ensures homeostasis and
survival of the cell in the face of stressors as different as starvation, infection, or protein …

Dynamic regulation of macroautophagy by distinctive ubiquitin-like proteins

DJ Klionsky, BA Schulman - Nature structural & molecular biology, 2014 - nature.com
Autophagy complements the ubiquitin-proteasome system in mediating protein turnover.
Whereas the proteasome degrades individual proteins modified with ubiquitin chains …

Molecular determinants regulating selective binding of autophagy adapters and receptors to ATG8 proteins

M Wirth, W Zhang, M Razi, L Nyoni, D Joshi… - Nature …, 2019 - nature.com
Autophagy is an essential recycling and quality control pathway. Mammalian ATG8 proteins
drive autophagosome formation and selective removal of protein aggregates and organelles …

Translocon component Sec62 acts in endoplasmic reticulum turnover during stress recovery

F Fumagalli, J Noack, TJ Bergmann, E Cebollero… - Nature cell …, 2016 - nature.com
The endoplasmic reticulum (ER) is a site of protein biogenesis in eukaryotic cells. Perturbing
ER homeostasis activates stress programs collectively called the unfolded protein response …

Atg8-family proteins—structural features and molecular interactions in autophagy and beyond

N Wesch, V Kirkin, VV Rogov - Cells, 2020 - mdpi.com
Autophagy is a common name for a number of catabolic processes, which keep the cellular
homeostasis by removing damaged and dysfunctional intracellular components. Impairment …

So many roads: the multifaceted regulation of autophagy induction

AF Corona Velazquez, WT Jackson - Molecular and cellular …, 2018 - Taylor & Francis
Autophagy is an evolutionary conserved, degradative process from single-cell eukaryotes,
such as Saccharomyces cerevisiae, to higher mammals, such as humans. The regulation of …