Spatiotemporal Omics-Refining the landscape of precision medicine

J Zhang, J Yin, Y Heng, K **e, A Chen, I Amit… - Life …, 2022 - academic.oup.com
Current streamline of precision medicine uses histomorphological and molecular
information to indicate individual phenotypes and genotypes to achieve optimal outcome of …

Cancer tissue of origin constrains the growth and metabolism of metastases

S Sivanand, Y Gultekin, PS Winter, SY Vermeulen… - Nature …, 2024 - nature.com
Metastases arise from subsets of cancer cells that disseminate from the primary tumour,. The
ability of cancer cells to thrive in a new tissue site is influenced by genetic and epigenetic …

Theoretical guarantees for phylogeny inference from single-cell lineage tracing

R Wang, R Zhang, A Khodaverdian, N Yosef - Proceedings of the National …, 2023 - pnas.org
Lineage-tracing technologies based on Clustered Regularly Interspaced Short Palindromic
Repeats and CRISPR-associated protein 9 (CRISPR-Cas9) genome editing have emerged …

FoxA1 and FoxA2 control growth and cellular identity in NKX2-1-positive lung adenocarcinoma

G Orstad, G Fort, TJ Parnell, A Jones, C Stubben… - Developmental cell, 2022 - cell.com
Changes in cellular identity (also known as histologic transformation or lineage plasticity)
can drive malignant progression and resistance to therapy in many cancers, including lung …

Interactive, integrated analysis of single-cell transcriptomic and phylogenetic data with PhyloVision

MG Jones, Y Rosen, N Yosef - Cell reports methods, 2022 - cell.com
Recent advances in CRISPR-Cas9 engineering and single-cell assays have enabled the
simultaneous measurement of single-cell transcriptomic and phylogenetic profiles. However …

Functionalized lineage tracing can enable the development of homogenization-based therapeutic strategies in cancer

C Gutierrez, CK Vilas, CJ Wu, AM Al'Khafaji - Frontiers in Immunology, 2022 - frontiersin.org
The therapeutic landscape across many cancers has dramatically improved since the
introduction of potent targeted agents and immunotherapy. Nonetheless, success of these …

Single Cell lineage Tracing Identifies Cancer Testis Antigens as Mediators of Chemoresistance in Small Cell Lung Cancer

H Wollenzien, Y Afeworki, R Szczepaniak-Sloane… - bioRxiv, 2022 - biorxiv.org
Abstract Small Cell Lung Cancer (SCLC) is often a heterogeneous tumor, where dynamic
regulation of key transcription factors can drive multiple populations of phenotypically …

FoxA1 and FoxA2 regulate growth and cellular identity in NKX2-1-positive lung adenocarcinoma

G Orstad, A Jones, TJ Parnell, G Fort, B Lohman… - bioRxiv, 2021 - biorxiv.org
Change in cancer cell identity is well characterized as a mechanism of cancer progression
and acquired resistance to targeted therapies. Lung adenocarcinoma (LUAD) exhibits …