Reparameterization of PM6 applied to organic Diradical molecules

T Saito, Y Kitagawa, Y Takano - The Journal of Physical Chemistry …, 2016 - ACS Publications
We have performed a reparameterization of PM6 (called rPM6) to compute open-shell
species, specifically organic diradical molecules, within a framework of the spin-unrestricted …

The role of explicit solvent molecules in the calculation of NMR chemical shifts of glycine in water

MC Caputo, PF Provasi, SPA Sauer - Theoretical Chemistry Accounts, 2018 - Springer
We present the results of a computational study of the NMR properties of glycine in water
solution at the level of density functional theory employing the B3LYP functional and the 6 …

Quantum mechanical/effective fragment potential molecular dynamics (QM/EFP-MD) study on intra-molecular proton transfer of glycine in water

CH Choi, S Re, M Feig, Y Sugita - Chemical Physics Letters, 2012 - Elsevier
We show that the hybrid quantum mechanical/effective fragment potential (QM/EFP) can be
a very effective and practical quantum mechanical molecular dynamics method, when it is …

A minimal implementation of the AMBER-PAICS interface for ab initio FMO-QM/MM-MD simulation

T Okamoto, T Ishikawa, Y Koyano… - Bulletin of the …, 2013 - academic.oup.com
For the purpose of providing a realistic description of the reaction mechanisms in large
molecular systems, we propose a quantum mechanical/molecular mechanical (QM/MM) …

An improvement in quantum mechanical description of solute-solvent interactions in condensed systems via the number-adaptive multiscale quantum mechanical …

N Takenaka, Y Kitamura, Y Koyano… - The Journal of Chemical …, 2012 - pubs.aip.org
An improvement in quantum mechanical description of solute-solvent interactions in condensed
systems via the number-adaptive multiscale quantum mechanical/molecular …

A quantum generalization of intrinsic reaction coordinate using path integral centroid coordinates

M Shiga, H Fujisaki - The Journal of Chemical Physics, 2012 - pubs.aip.org
We propose a generalization of the intrinsic reaction coordinate (IRC) for quantum many-
body systems described in terms of the mass-weighted ring polymer centroids in the …

Efficient approach to include molecular polarizations using charge and atom dipole response kernels to calculate free energy gradients in the QM/MM scheme

T Asada, K Ando, K Sakurai, S Koseki… - Physical Chemistry …, 2015 - pubs.rsc.org
An efficient approach to evaluate free energy gradients (FEGs) within the quantum
mechanical/molecular mechanical (QM/MM) framework has been proposed to clarify …

Vibrational spectroscopy in solution through perturbative ab initio molecular dynamics simulations

C Bistafa, Y Kitamura, MTC Martins-Costa… - Journal of Chemical …, 2019 - ACS Publications
We have developed a method that allows computing the vibrational spectra at a high
quantum mechanical level for molecules in solution or other complex systems. The method …

[HTML][HTML] Theory of molecular nonadiabatic electron dynamics in condensed phases

K Takatsuka - The Journal of Chemical Physics, 2017 - pubs.aip.org
In light of the rapid progress of ultrafast chemical dynamics driven by the pulse lasers having
width as short as several tens of attoseconds, we herein develop a theory of nonadiabatic …

Cost-Effective Method for Free-Energy Minimization in Complex Systems with Elaborated Ab Initio Potentials

C Bistafa, Y Kitamura, MTC Martins-Costa… - Journal of chemical …, 2018 - ACS Publications
We describe a method to locate stationary points in the free-energy hypersurface of complex
molecular systems using high-level correlated ab initio potentials. In this work, we assume a …