Plant virus metagenomics: advances in virus discovery

MJ Roossinck, DP Martin, P Roumagnac - Phytopathology, 2015 - Am Phytopath Society
In recent years plant viruses have been detected from many environments, including
domestic and wild plants and interfaces between these systems—aquatic sources, feces of …

RNA interference in insects: protecting beneficials and controlling pests

E Vogel, D Santos, L Mingels, TW Verdonckt… - Frontiers in …, 2019 - frontiersin.org
Insects constitute the largest and most diverse group of animals on Earth with an equally
diverse virome. The main antiviral immune system of these animals is the post …

Current developments and challenges in plant viral diagnostics: A systematic review

GT Mehetre, VV Leo, G Singh, A Sorokan, I Maksimov… - Viruses, 2021 - mdpi.com
Plant viral diseases are the foremost threat to sustainable agriculture, leading to several
billion dollars in losses every year. Many viruses infecting several crops have been …

Illuminating an ecological blackbox: using high throughput sequencing to characterize the plant virome across scales

F Maclot, T Candresse, D Filloux… - Frontiers in …, 2020 - frontiersin.org
The ecology of plant viruses began to be explored at the end of the 19th century. Since then,
major advances have revealed mechanisms of virus-host-vector interactions in various …

Advanced DNA-based point-of-care diagnostic methods for plant diseases detection

HY Lau, SA Walper, G Lasarte Aragonés, KE Sapsford… - ACS …, 2018 - ACS Publications
Although a fundamental understanding of the pathogenicity of most biothreat agents has
been elucidated and available treatments have increased substantially over the past …

A framework for the evaluation of biosecurity, commercial, regulatory, and scientific impacts of plant viruses and viroids identified by NGS technologies

S Massart, T Candresse, J Gil, C Lacomme… - Frontiers in …, 2017 - frontiersin.org
Recent advances in high-throughput sequencing technologies and bioinformatics have
generated huge new opportunities for discovering and diagnosing plant viruses and viroids …

Identification of viruses and viroids by next-generation sequencing and homology-dependent and homology-independent algorithms

Q Wu, SW Ding, Y Zhang, S Zhu - Annual review of …, 2015 - annualreviews.org
A fast, accurate, and full indexing of viruses and viroids in a sample for the inspection and
quarantine services and disease management is desirable but was unrealistic until recently …

Virus detection by high-throughput sequencing of small RNAs: Large-scale performance testing of sequence analysis strategies

S Massart, M Chiumenti, K De Jonghe… - …, 2019 - Am Phytopath Society
Recent developments in high-throughput sequencing (HTS), also called next-generation
sequencing (NGS), technologies and bioinformatics have drastically changed research on …

Transgene silencing, RNA interference, and the antiviral defense mechanism directed by small interfering RNAs

SW Ding - Phytopathology®, 2023 - Am Phytopath Society
One important discovery in plant pathology over recent decades is the natural antiviral
defense mechanism mediated by RNA interference (RNAi). In antiviral RNAi, virus infection …