Overlay databank unlocks data-driven analyses of biomolecules for all
Tools based on artificial intelligence (AI) are currently revolutionising many fields, yet their
applications are often limited by the lack of suitable training data in programmatically …
applications are often limited by the lack of suitable training data in programmatically …
Pathways to a shiny future: Building the foundation for computational physical chemistry and biophysics in 2050
In the last quarter-century, the field of molecular dynamics (MD) has undergone a
remarkable transformation, propelled by substantial enhancements in software, hardware …
remarkable transformation, propelled by substantial enhancements in software, hardware …
Martini 3 coarse-grained force field for cholesterol
L Borges-Araújo, AC Borges-Araújo… - Journal of Chemical …, 2023 - ACS Publications
Cholesterol plays a crucial role in biomembranes by regulating various properties, such as
fluidity, rigidity, permeability, and organization of lipid bilayers. The latest version of the …
fluidity, rigidity, permeability, and organization of lipid bilayers. The latest version of the …
Photophysics in Biomembranes: Computational Insight into the Interaction between Lipid Bilayers and Chromophores
Conspectus Light is ubiquitously available to probe the structure and dynamics of
biomolecules and biological tissues. Generally, this cannot be done directly with visible light …
biomolecules and biological tissues. Generally, this cannot be done directly with visible light …
[HTML][HTML] Depletion of membrane cholesterol modifies structure, dynamic and activation of Nav1. 7
Cholesterol is a major component of plasma membranes and plays a significant role in
actively regulating the functioning of several membrane proteins in humans. In this study, we …
actively regulating the functioning of several membrane proteins in humans. In this study, we …
Evaluating polarizable biomembrane simulations against experiments
Owing to the increase of available computational capabilities and the potential for providing
a more accurate description, polarizable molecular dynamics force fields are gaining …
a more accurate description, polarizable molecular dynamics force fields are gaining …
Exploring the Properties of Curved Lipid Membranes: Comparative Analysis of Atomistic and Coarse-Grained Force Fields
M Domanska, P Setny - The Journal of Physical Chemistry B, 2024 - ACS Publications
Curvature emerges as a fundamental membrane characteristic crucial for diverse biological
processes, including vesicle formation, cell signaling, and membrane trafficking …
processes, including vesicle formation, cell signaling, and membrane trafficking …
Atherosclerotic Oxidized Lipids Affect Formation and Biophysical Properties of Supported Lipid Bilayers and Simulated Membranes
DE Santa, TP Brown, W Im… - The Journal of Physical …, 2024 - ACS Publications
Oxidized lipids arising from oxidative stress are associated with many serious health
conditions, including cardiovascular diseases. For example, KDdiA-PC and KOdiA-PC are …
conditions, including cardiovascular diseases. For example, KDdiA-PC and KOdiA-PC are …
Interaction of MRI Contrast Agent [Gd(DOTA)]− with Lipid Membranes: A Molecular Dynamics Study
Contrast agents are important imaging probes in clinical MRI, allowing the identification of
anatomic changes that otherwise would not be possible. Intensive research on the …
anatomic changes that otherwise would not be possible. Intensive research on the …
Atomic Insights into pH-Dependent and Water Permeation of mRNA-Lipid Nanoparticles
SJ Feng, GW Chu, H Li, JF Chen - Molecular Pharmaceutics, 2025 - ACS Publications
The exposure of mRNA to water is likely to contribute to the instability of RNA vaccines upon
storage under nonfrozen conditions. Using atomistic molecular dynamics (MD) simulations …
storage under nonfrozen conditions. Using atomistic molecular dynamics (MD) simulations …