Quantifying information of intracellular signaling: progress with machine learning
Cells convey information about their extracellular environment to their core functional
machineries. Studying the capacity of intracellular signaling pathways to transmit information …
machineries. Studying the capacity of intracellular signaling pathways to transmit information …
The genotype‐phenotype landscape of an allosteric protein
Allostery is a fundamental biophysical mechanism that underlies cellular sensing, signaling,
and metabolism. Yet a quantitative understanding of allosteric genotype‐phenotype …
and metabolism. Yet a quantitative understanding of allosteric genotype‐phenotype …
Exploiting information and control theory for directing gene expression in cell populations
L Henrion, M Delvenne, F Bajoul Kakahi… - Frontiers in …, 2022 - frontiersin.org
Microbial populations can adapt to adverse environmental conditions either by appropriately
sensing and responding to the changes in their surroundings or by stochastically switching …
sensing and responding to the changes in their surroundings or by stochastically switching …
Precision engineering of biological function with large-scale measurements and machine learning
As synthetic biology expands and accelerates into real-world applications, methods for
quantitatively and precisely engineering biological function become increasingly relevant …
quantitatively and precisely engineering biological function become increasingly relevant …
Robust topology optimization under loading uncertainties via stochastic reduced order models
An efficient approach for topology optimization under uncertainty is presented. Stochastic
reduced order models (SROMs) are leveraged for the modeling and propagation of …
reduced order models (SROMs) are leveraged for the modeling and propagation of …
Automated analysis of bacterial flow cytometry data with FlowGateNIST
D Ross - PLoS One, 2021 - journals.plos.org
Flow cytometry is commonly used to evaluate the performance of engineered bacteria. With
increasing use of high-throughput experimental methods, there is a need for automated …
increasing use of high-throughput experimental methods, there is a need for automated …
[PDF][PDF] Method for reproducible automated bacterial cell culture and measurement
Microbial cell culture is one of the most commonly performed protocols for synthetic biology,
and laboratories are increasingly using 96-well plates and laboratory automation systems …
and laboratories are increasingly using 96-well plates and laboratory automation systems …
Decoding cellular communication: An information theoretic perspective on cytokine and endocrine signaling
Humoral communication is mediated by complex signaling pathways that are
heterogeneously activated in individual cells. According to Shannon's information theory …
heterogeneously activated in individual cells. According to Shannon's information theory …
Efficacy of information transmission in cellular communication
Cell signaling is essential for individual cells to execute various tasks and respond to
changes in their environment. It is carried out via diffusing molecules, whose transport is …
changes in their environment. It is carried out via diffusing molecules, whose transport is …
High content imaging for monitoring signalling dynamics in single cells
KL Garner - Journal of Molecular Endocrinology, 2020 - jme.bioscientifica.com
All living cells are sensors of their environment: they sense signals, hormones, cytokines,
and growth factors, among others. Binding of these signals to cell surface receptors initiates …
and growth factors, among others. Binding of these signals to cell surface receptors initiates …