Plant small RNAs: their biogenesis, regulatory roles, and functions

J Zhan, BC Meyers - Annual Review of Plant Biology, 2023 - annualreviews.org
Plant cells accumulate small RNA molecules that regulate plant development, genome
stability, and environmental responses. These small RNAs fall into three major classes …

The expanding world of small RNAs in plants

F Borges, RA Martienssen - Nature reviews Molecular cell biology, 2015 - nature.com
Plant genomes encode various small RNAs that function in distinct, yet overlap**, genetic
and epigenetic silencing pathways. However, the abundance and diversity of small-RNA …

Classification and comparison of small RNAs from plants

MJ Axtell - Annual review of plant biology, 2013 - annualreviews.org
Regulatory small RNAs, which range in size from 20 to 24 nucleotides, are ubiquitous
components of endogenous plant transcriptomes, as well as common responses to …

[HTML][HTML] The ubiquitination machinery of the ubiquitin system

J Callis - The Arabidopsis book/American Society of Plant …, 2014 - ncbi.nlm.nih.gov
The protein ubiquitin is a covalent modifier of proteins, including itself. The ubiquitin system
encompasses the enzymes required for catalysing attachment of ubiquitin to substrates as …

Molecular mechanisms underlying phosphate sensing, signaling, and adaptation in plants

Z Zhang, H Liao, WJ Lucas - Journal of integrative plant biology, 2014 - Wiley Online Library
As an essential plant macronutrient, the low availability of phosphorus (P) in most soils
imposes serious limitation on crop production. Plants have evolved complex responsive and …

Hairy Root Transformation Using Agrobacterium rhizogenes as a Tool for Exploring Cell Type-Specific Gene Expression and Function Using Tomato as a Model

M Ron, K Kajala, G Pauluzzi, D Wang… - Plant …, 2014 - academic.oup.com
Agrobacterium rhizogenes (or Rhizobium rhizogenes) is able to transform plant genomes
and induce the production of hairy roots. We describe the use of A. rhizogenes in tomato …

Genome‐wide identification of EMBRYO‐DEFECTIVE (EMB) genes required for growth and development in Arabidopsis

DW Meinke - New Phytologist, 2020 - Wiley Online Library
With the emergence of high‐throughput methods in plant biology, the importance of long‐
term projects characterized by incremental advances involving multiple laboratories can …

Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing

JR Haag, CS Pikaard - Nature reviews Molecular cell biology, 2011 - nature.com
In all eukaryotes, nuclear DNA-dependent RNA polymerases I, II and III synthesize the
myriad RNAs that are essential for life. Remarkably, plants have evolved two additional …

Battles and hijacks: noncoding transcription in plants

F Ariel, N Romero-Barrios, T Jégu, M Benhamed… - Trends in plant …, 2015 - cell.com
Noncoding RNAs have emerged as major components of the eukaryotic transcriptome.
Genome-wide analyses revealed the existence of thousands of long noncoding RNAs …

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

X Song, P Li, J Zhai, M Zhou, L Ma, B Liu… - The Plant …, 2012 - Wiley Online Library
Higher plants have evolved multiple proteins in the RNase III family to produce and regulate
different classes of small RNAs with specialized molecular functions. In rice (Oryza sativa) …