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A new flow path: eDNA connecting hydrology and biology
Environmental DNA (eDNA) has revolutionized ecological research, particularly for
biodiversity assessment in various environments, most notably aquatic media …
biodiversity assessment in various environments, most notably aquatic media …
[HTML][HTML] TICI: a taxon-independent community index for eDNA-based ecological health assessment
SP Wilkinson, AA Gault, SA Welsh, JP Smith, BO David… - PeerJ, 2024 - peerj.com
Global biodiversity is declining at an ever-increasing rate. Yet effective policies to mitigate or
reverse these declines require ecosystem condition data that are rarely available …
reverse these declines require ecosystem condition data that are rarely available …
Omics-based ecosurveillance for the assessment of ecosystem function, health, and resilience
Current environmental monitoring efforts often focus on known, regulated contaminants
ignoring the potential effects of unmeasured compounds and/or environmental factors …
ignoring the potential effects of unmeasured compounds and/or environmental factors …
[HTML][HTML] Abundance and diversity of n-alkane and PAH-degrading bacteria and their functional genes–potential for use in detection of marine oil pollution
A Bagi, K Knapik, T Baussant - Science of the Total Environment, 2022 - Elsevier
Monitoring environmental status through molecular investigation of microorganisms in the
marine environment is suggested as a potentially very effective method for biomonitoring …
marine environment is suggested as a potentially very effective method for biomonitoring …
Diversity, composition and potential roles of sedimentary microbial communities in different coastal substrates around subtropical Okinawa Island, Japan
K Hamamoto, M Mizuyama, M Nishijima… - Environmental …, 2024 - Springer
Background Marine benthic prokaryotic communities play crucial roles in material recycling
within coastal environments, including coral reefs. Coastal sedimentary microbiomes are …
within coastal environments, including coral reefs. Coastal sedimentary microbiomes are …
[HTML][HTML] Embracing eDNA and machine learning for taxonomy-free microorganisms biomonitoring to assess the river ecological status
Currently implemented biomonitoring and bioassessment are an indispensable part of river
management worldwide. Although DNA-based biomonitoring is a promising tool for …
management worldwide. Although DNA-based biomonitoring is a promising tool for …
Assessing the relevance of DNA metabarcoding compared to morphological identification for lake phytoplankton monitoring
Phytoplankton is a key biological group used to assess the ecological status of lakes. The
classical monitoring approach relies on microscopic identification and counting of …
classical monitoring approach relies on microscopic identification and counting of …
Specialists regulate microbial network and community assembly in subtropical seagrass sediments under differing land use conditions
W Zhou, X Shen, Z Xu, Q Yang, M Jiao, H Li… - Journal of …, 2024 - Elsevier
Microorganisms in the sediment play a pivotal role in the functioning and stability of
seagrass ecosystems and their dynamics are influenced by the nutrient acquisition …
seagrass ecosystems and their dynamics are influenced by the nutrient acquisition …
Maximising environmental pressure-response relationship signals from diatom-based metabarcoding in rivers
DNA metabarcoding has been performed on a large number of river phytobenthos samples
collected from the UK, using rbcL primers optimised for diatoms. Within this dataset the …
collected from the UK, using rbcL primers optimised for diatoms. Within this dataset the …
Environmental DNA-based profiling of benthic bacterial and eukaryote communities along a crude oil spill gradient in a coral reef in the Persian Gulf
Coral reef ecosystems in the Persian Gulf are frequently exposed to crude oil spills. We
investigated benthic bacterial and eukaryote community structures at such coral reef sites …
investigated benthic bacterial and eukaryote community structures at such coral reef sites …