A new flow path: eDNA connecting hydrology and biology

DR URycki, AA Kirtane, R Aronoff… - Wiley …, 2024 - Wiley Online Library
Environmental DNA (eDNA) has revolutionized ecological research, particularly for
biodiversity assessment in various environments, most notably aquatic media …

Omics-based ecosurveillance for the assessment of ecosystem function, health, and resilience

DJ Beale, OAH Jones, U Bose… - Emerging topics in …, 2022 - portlandpress.com
Current environmental monitoring efforts often focus on known, regulated contaminants
ignoring the potential effects of unmeasured compounds and/or environmental factors …

[HTML][HTML] TICI: a taxon-independent community index for eDNA-based ecological health assessment

SP Wilkinson, AA Gault, SA Welsh, JP Smith, BO David… - PeerJ, 2024 - peerj.com
Global biodiversity is declining at an ever-increasing rate. Yet effective policies to mitigate or
reverse these declines require ecosystem condition data that are rarely available …

Simultaneous analysis of seven 16S rRNA hypervariable gene regions increases efficiency in marine bacterial diversity detection

K Leontidou, IL Abad‐Recio, V Rubel… - Environmental …, 2023 - Wiley Online Library
Environmental DNA sequencing is the gold standard to reveal microbial community
structures. In most applications, a one‐fragment PCR approach is applied to amplify a …

[HTML][HTML] Abundance and diversity of n-alkane and PAH-degrading bacteria and their functional genes–potential for use in detection of marine oil pollution

A Bagi, K Knapik, T Baussant - Science of the Total Environment, 2022 - Elsevier
Monitoring environmental status through molecular investigation of microorganisms in the
marine environment is suggested as a potentially very effective method for biomonitoring …

Diversity, composition and potential roles of sedimentary microbial communities in different coastal substrates around subtropical Okinawa Island, Japan

K Hamamoto, M Mizuyama, M Nishijima… - Environmental …, 2024 - Springer
Background Marine benthic prokaryotic communities play crucial roles in material recycling
within coastal environments, including coral reefs. Coastal sedimentary microbiomes are …

Assessing the relevance of DNA metabarcoding compared to morphological identification for lake phytoplankton monitoring

MMN Gelis, A Canino, A Bouchez, I Domaizon… - Science of The Total …, 2024 - Elsevier
Phytoplankton is a key biological group used to assess the ecological status of lakes. The
classical monitoring approach relies on microscopic identification and counting of …

Specialists regulate microbial network and community assembly in subtropical seagrass sediments under differing land use conditions

W Zhou, X Shen, Z Xu, Q Yang, M Jiao, H Li… - Journal of …, 2024 - Elsevier
Microorganisms in the sediment play a pivotal role in the functioning and stability of
seagrass ecosystems and their dynamics are influenced by the nutrient acquisition …

Environmental DNA-based profiling of benthic bacterial and eukaryote communities along a crude oil spill gradient in a coral reef in the Persian Gulf

M Oladi, K Leontidou, T Stoeck, MR Shokri - Marine Pollution Bulletin, 2022 - Elsevier
Coral reef ecosystems in the Persian Gulf are frequently exposed to crude oil spills. We
investigated benthic bacterial and eukaryote community structures at such coral reef sites …

A bacterial index to estimate lake trophic level: National scale validation

JK Pearman, SA Wood, MJ Vandergoes… - Science of the Total …, 2022 - Elsevier
Lakes and their catchments have been subjected to centuries to millennia of exploitation by
humans. Efficient monitoring methods are required to promote proactive protection and …