Macromolecular crowding is more than hard-core repulsions

SL Speer, CJ Stewart, L Sapir… - Annual Review of …, 2022 - annualreviews.org
Cells are crowded, but proteins are almost always studied in dilute aqueous buffer. We
review the experimental evidence that crowding affects the equilibrium thermodynamics of …

Theory of protein folding: the energy landscape perspective

JN Onuchic, Z Luthey-Schulten… - Annual review of …, 1997 - annualreviews.org
▪ Abstract The energy landscape theory of protein folding is a statistical description of a
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …

The MARTINI coarse-grained force field: extension to proteins

L Monticelli, SK Kandasamy, X Periole… - Journal of chemical …, 2008 - ACS Publications
Many biologically interesting phenomena occur on a time scale that is too long to be studied
by atomistic simulations. These phenomena include the dynamics of large proteins and self …

A field guide to foldamers

DJ Hill, MJ Mio, RB Prince, TS Hughes… - Chemical …, 2001 - ACS Publications
The breadth of structure and function displayed by the molecules of biology is remarkable.
Considering that there are only three major biopolymer backbones (proteins, ribonucleic …

Principles of protein folding—a perspective from simple exact models

KA Dill, S Bromberg, K Yue, HS Chan… - Protein …, 1995 - Wiley Online Library
General principles of protein structure, stability, and folding kinetics have recently been
explored in computer simulations of simple exact lattice models. These models represent …

Molten globule and protein folding

OB Ptitsyn - Advances in protein chemistry, 1995 - Elsevier
Publisher Summary This chapter describes the present state of the studies of the molten
globule state and its role in protein folding and physiological processes. Recent data on the …

[PDF][PDF] Denatured states of proteins

KA Dill, D Shortle - Annual review of biochemistry, 1991 - researchgate.net
In this review, we summarize results from theory and experiment that bear on the following
questions: What are the denatured conformations of pro teins? How are they affected by …

[KNIHA][B] Darwinism evolving: Systems dynamics and the genealogy of natural selection

DJ Depew, BH Weber - 1994 - direct.mit.edu
This book mainly aims to present an accurate history of the Darwinian tradition conducted
from a point of view that is both socially contextualized and conceptually reflective, and to do …

Biophysics of protein evolution and evolutionary protein biophysics

T Sikosek, HS Chan - Journal of The Royal Society …, 2014 - royalsocietypublishing.org
The study of molecular evolution at the level of protein-coding genes often entails comparing
large datasets of sequences to infer their evolutionary relationships. Despite the importance …

Cooperativity in protein-folding kinetics.

KA Dill, KM Fiebig, HS Chan - Proceedings of the National Academy of …, 1993 - pnas.org
How does a protein find its native state without a globally exhaustive search? We propose
the" HZ"(hydrophobic zipper) hypothesis: hydrophobic contacts act as constraints that bring …