The architectonics of programmable RNA and DNA nanostructures

L Jaeger, A Chworos - Current opinion in structural biology, 2006 - Elsevier
The past several years have witnessed the emergence of a new world of nucleic-acid-based
architectures with highly predictable and programmable self-assembly properties. For …

An RNA folding motif: GNRA tetraloop–receptor interactions

JL Fiore, DJ Nesbitt - Quarterly reviews of biophysics, 2013 - cambridge.org
Nearly two decades after Westhof and Michel first proposed that RNA tetraloops may interact
with distal helices, tetraloop–receptor interactions have been recognized as ubiquitous …

Building programmable jigsaw puzzles with RNA

A Chworos, I Severcan, AY Koyfman, P Weinkam… - Science, 2004 - science.org
One challenge in supramolecular chemistry is the design of versatile, self-assembling
building blocks to attain total control of arrangement of matter at a molecular level. We have …

Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes

WW Grabow, P Zakrevsky, KA Afonin… - Therapeutic RNA …, 2021 - taylorfrancis.com
RNA is an attractive biopolymer for nanodesign of self-assembling particles for
nanobiotechnology and synthetic biology. Here, we experimentally characterize by …

Controlling RNA self-assembly to form filaments

L Nasalean, S Baudrey, NB Leontis… - Nucleic acids …, 2006 - academic.oup.com
Fundamental control over supra-molecular self-assembly for organization of matter on the
nano-scale is a major objective of nanoscience and nanotechnology.'RNA tectonics' is the …

De novo synthesis and development of an RNA enzyme

Y Ikawa, K Tsuda, S Matsumura… - Proceedings of the …, 2004 - National Acad Sciences
Arbitrary manipulation of molecular recognition at the atomic level has many applications.
However, systematic design and de novo synthesis of an artificial enzyme based on such …

In vitro RNA random pools are not structurally diverse: a computational analysis

J Gevertz, HH Gan, T Schlick - Rna, 2005 - rnajournal.cshlp.org
In vitro selection of functional RNAs from large random sequence pools has led to the
identification of many ligand-binding and catalytic RNAs. However, the structural diversity in …

Characterization of tectoRNA assembly with cationic conjugated polymers

B Liu, S Baudrey, L Jaeger… - Journal of the American …, 2004 - ACS Publications
Association between RNAs with preprogrammed molecular recognition units can be
quantified by using cationic, water-soluble conjugated polymers. The method uses a …

Biochemical characterization of the kink‐turn RNA motif

S Matsumura, Y Ikawa, T Inoue - Nucleic acids research, 2003 - academic.oup.com
RNA, which acts as a medium for transmitting genetic information, plays a variety of roles in
a cell. As with proteins, elucidation of the three‐dimensional (3D) structures of RNAs is …

Duplex stem replacement with bPNA+ triplex hybrid stems enables reporting on tertiary interactions of internal RNA domains

S Miao, Y Liang, I Marathe, J Mao… - Journal of the …, 2019 - ACS Publications
We report herein the synthesis and DNA/RNA binding properties of bPNA+, a new variant of
bifacial peptide nucleic acid (bPNA) that binds oligo T/U nucleic acids to form triplex hybrids …