The architectonics of programmable RNA and DNA nanostructures
L Jaeger, A Chworos - Current opinion in structural biology, 2006 - Elsevier
The past several years have witnessed the emergence of a new world of nucleic-acid-based
architectures with highly predictable and programmable self-assembly properties. For …
architectures with highly predictable and programmable self-assembly properties. For …
An RNA folding motif: GNRA tetraloop–receptor interactions
JL Fiore, DJ Nesbitt - Quarterly reviews of biophysics, 2013 - cambridge.org
Nearly two decades after Westhof and Michel first proposed that RNA tetraloops may interact
with distal helices, tetraloop–receptor interactions have been recognized as ubiquitous …
with distal helices, tetraloop–receptor interactions have been recognized as ubiquitous …
Building programmable jigsaw puzzles with RNA
One challenge in supramolecular chemistry is the design of versatile, self-assembling
building blocks to attain total control of arrangement of matter at a molecular level. We have …
building blocks to attain total control of arrangement of matter at a molecular level. We have …
Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes
RNA is an attractive biopolymer for nanodesign of self-assembling particles for
nanobiotechnology and synthetic biology. Here, we experimentally characterize by …
nanobiotechnology and synthetic biology. Here, we experimentally characterize by …
Controlling RNA self-assembly to form filaments
L Nasalean, S Baudrey, NB Leontis… - Nucleic acids …, 2006 - academic.oup.com
Fundamental control over supra-molecular self-assembly for organization of matter on the
nano-scale is a major objective of nanoscience and nanotechnology.'RNA tectonics' is the …
nano-scale is a major objective of nanoscience and nanotechnology.'RNA tectonics' is the …
De novo synthesis and development of an RNA enzyme
Y Ikawa, K Tsuda, S Matsumura… - Proceedings of the …, 2004 - National Acad Sciences
Arbitrary manipulation of molecular recognition at the atomic level has many applications.
However, systematic design and de novo synthesis of an artificial enzyme based on such …
However, systematic design and de novo synthesis of an artificial enzyme based on such …
In vitro RNA random pools are not structurally diverse: a computational analysis
In vitro selection of functional RNAs from large random sequence pools has led to the
identification of many ligand-binding and catalytic RNAs. However, the structural diversity in …
identification of many ligand-binding and catalytic RNAs. However, the structural diversity in …
Characterization of tectoRNA assembly with cationic conjugated polymers
B Liu, S Baudrey, L Jaeger… - Journal of the American …, 2004 - ACS Publications
Association between RNAs with preprogrammed molecular recognition units can be
quantified by using cationic, water-soluble conjugated polymers. The method uses a …
quantified by using cationic, water-soluble conjugated polymers. The method uses a …
Biochemical characterization of the kink‐turn RNA motif
S Matsumura, Y Ikawa, T Inoue - Nucleic acids research, 2003 - academic.oup.com
RNA, which acts as a medium for transmitting genetic information, plays a variety of roles in
a cell. As with proteins, elucidation of the three‐dimensional (3D) structures of RNAs is …
a cell. As with proteins, elucidation of the three‐dimensional (3D) structures of RNAs is …
Duplex stem replacement with bPNA+ triplex hybrid stems enables reporting on tertiary interactions of internal RNA domains
We report herein the synthesis and DNA/RNA binding properties of bPNA+, a new variant of
bifacial peptide nucleic acid (bPNA) that binds oligo T/U nucleic acids to form triplex hybrids …
bifacial peptide nucleic acid (bPNA) that binds oligo T/U nucleic acids to form triplex hybrids …