Attention is all you need: utilizing attention in AI-enabled drug discovery

Y Zhang, C Liu, M Liu, T Liu, H Lin… - Briefings in …, 2024 - academic.oup.com
Recently, attention mechanism and derived models have gained significant traction in drug
development due to their outstanding performance and interpretability in handling complex …

Comprehensive evaluation of deep and graph learning on drug–drug interactions prediction

X Lin, L Dai, Y Zhou, ZG Yu, W Zhang… - Briefings in …, 2023 - academic.oup.com
Recent advances and achievements of artificial intelligence (AI) as well as deep and graph
learning models have established their usefulness in biomedical applications, especially in …

DSN-DDI: an accurate and generalized framework for drug–drug interaction prediction by dual-view representation learning

Z Li, S Zhu, B Shao, X Zeng, T Wang… - Briefings in …, 2023 - academic.oup.com
Drug–drug interaction (DDI) prediction identifies interactions of drug combinations in which
the adverse side effects caused by the physicochemical incompatibility have attracted much …

Geometric interaction graph neural network for predicting protein–ligand binding affinities from 3d structures (gign)

Z Yang, W Zhong, Q Lv, T Dong… - The journal of physical …, 2023 - ACS Publications
Predicting protein–ligand binding affinities (PLAs) is a core problem in drug discovery.
Recent advances have shown great potential in applying machine learning (ML) for PLA …

Application of Artificial Intelligence in Drug–Drug Interactions Prediction: A Review

Y Zhang, Z Deng, X Xu, Y Feng… - Journal of chemical …, 2023 - ACS Publications
Drug–drug interactions (DDI) are a critical aspect of drug research that can have adverse
effects on patients and can lead to serious consequences. Predicting these events …

MDDI-SCL: predicting multi-type drug-drug interactions via supervised contrastive learning

S Lin, W Chen, G Chen, S Zhou, DQ Wei… - Journal of …, 2022 - Springer
The joint use of multiple drugs may cause unintended drug-drug interactions (DDIs) and
result in adverse consequence to the patients. Accurate identification of DDI types can not …

Learning motif-based graphs for drug–drug interaction prediction via local–global self-attention

Y Zhong, G Li, J Yang, H Zheng, Y Yu… - Nature Machine …, 2024 - nature.com
Unexpected drug–drug interactions (DDIs) are important issues for both pharmaceutical
research and clinical applications due to the high risk of causing severe adverse drug …

A dual graph neural network for drug–drug interactions prediction based on molecular structure and interactions

M Ma, X Lei - PLOS Computational Biology, 2023 - journals.plos.org
Expressive molecular representation plays critical roles in researching drug design, while
effective methods are beneficial to learning molecular representations and solving related …

TCMBank: bridges between the largest herbal medicines, chemical ingredients, target proteins, and associated diseases with intelligence text mining

Q Lv, G Chen, H He, Z Yang, L Zhao, HY Chen… - Chemical …, 2023 - pubs.rsc.org
Traditional Chinese Medicine (TCM) has long been viewed as a precious source of modern
drug discovery. AI-assisted drug discovery (AIDD) has been investigated extensively …

DSIL-DDI: a domain-invariant substructure interaction learning for generalizable drug–drug interaction prediction

Z Tang, G Chen, H Yang, W Zhong… - IEEE Transactions on …, 2023 - ieeexplore.ieee.org
Drug–drug interactions (DDIs) trigger unexpected pharmacological effects in vivo, often with
unknown causal mechanisms. Deep learning methods have been developed to better …