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Exploiting induced and natural epigenetic variation for crop improvement
Plant breeding has traditionally relied on combining the genetic diversity present within a
species to develop combinations of alleles that provide desired traits. Epigenetic diversity …
species to develop combinations of alleles that provide desired traits. Epigenetic diversity …
A complete telomere-to-telomere assembly of the maize genome
J Chen, Z Wang, K Tan, W Huang, J Shi, T Li, J Hu… - Nature …, 2023 - nature.com
A complete telomere-to-telomere (T2T) finished genome has been the long pursuit of
genomic research. Through generating deep coverage ultralong Oxford Nanopore …
genomic research. Through generating deep coverage ultralong Oxford Nanopore …
Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement
Epigenetics is defined as changes in gene expression that are not associated with changes
in DNA sequence but due to the result of methylation of DNA and post-translational …
in DNA sequence but due to the result of methylation of DNA and post-translational …
The maize W22 genome provides a foundation for functional genomics and transposon biology
The maize W22 inbred has served as a platform for maize genetics since the mid twentieth
century. To streamline maize genome analyses, we have sequenced and de novo …
century. To streamline maize genome analyses, we have sequenced and de novo …
RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome
The maize genome is relatively large (∼ 2.3 Gb) and has a complex organization of
interspersed genes and transposable elements, which necessitates frequent boundaries …
interspersed genes and transposable elements, which necessitates frequent boundaries …
Evolutionary and functional genomics of DNA methylation in maize domestication and improvement
DNA methylation is a ubiquitous chromatin feature, present in 25% of cytosines in the maize
genome, but variation and evolution of the methylation landscape during maize …
genome, but variation and evolution of the methylation landscape during maize …
Population-level analysis reveals the widespread occurrence and phenotypic consequence of DNA methylation variation not tagged by genetic variation in maize
J Xu, G Chen, PJ Hermanson, Q Xu, C Sun, W Chen… - Genome biology, 2019 - Springer
Background DNA methylation can provide a source of heritable information that is
sometimes entirely uncoupled from genetic variation. However, the extent of this uncoupling …
sometimes entirely uncoupled from genetic variation. However, the extent of this uncoupling …
DNA methylation footprints during soybean domestication and improvement
Y Shen, J Zhang, Y Liu, S Liu, Z Liu, Z Duan, Z Wang… - Genome biology, 2018 - Springer
Background In addition to genetic variation, epigenetic variation plays an important role in
determining various biological processes. The importance of natural genetic variation to …
determining various biological processes. The importance of natural genetic variation to …
Genome-wide DNA Methylation analysis in response to salinity in the model plant caliph medic (Medicago truncatula)
Background DNA methylation has a potential role in controlling gene expression and may,
therefore, contribute to salinity adaptation in plants. Caliph medic (Medicago truncatula) is a …
therefore, contribute to salinity adaptation in plants. Caliph medic (Medicago truncatula) is a …
Epigenetics and its role in effecting agronomical traits
C Gupta, RK Salgotra - Frontiers in Plant Science, 2022 - frontiersin.org
Climate-resilient crops with improved adaptation to the changing climate are urgently
needed to feed the growing population. Hence, develo** high-yielding crop varieties with …
needed to feed the growing population. Hence, develo** high-yielding crop varieties with …