Cloud computing for genomic data analysis and collaboration
B Langmead, A Nellore - Nature Reviews Genetics, 2018 - nature.com
Next-generation sequencing has made major strides in the past decade. Studies based on
large sequencing data sets are growing in number, and public archives for raw sequencing …
large sequencing data sets are growing in number, and public archives for raw sequencing …
Towards revealing the functions of all genes in plants
The great recent progress made in identifying the molecular parts lists of organisms
revealed the paucity of our understanding of what most of the parts do. In this review, we …
revealed the paucity of our understanding of what most of the parts do. In this review, we …
Highly accurate protein structure prediction for the human proteome
Protein structures can provide invaluable information, both for reasoning about biological
processes and for enabling interventions such as structure-based drug development or …
processes and for enabling interventions such as structure-based drug development or …
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
AG Baltz, M Munschauer, B Schwanhäusser, A Vasile… - Molecular cell, 2012 - cell.com
Protein-RNA interactions are fundamental to core biological processes, such as mRNA
splicing, localization, degradation, and translation. We developed a photoreactive …
splicing, localization, degradation, and translation. We developed a photoreactive …
Tertiary model of a plant cellulose synthase
A 3D atomistic model of a plant cellulose synthase (CESA) has remained elusive despite
over forty years of experimental effort. Here, we report a computationally predicted 3D …
over forty years of experimental effort. Here, we report a computationally predicted 3D …
One Stop Shop for Everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012
P Fey, RJ Dodson, S Basu, RL Chisholm - Dictyostelium discoideum …, 2013 - Springer
Abstract dictyBase (http://dictybase. org), the model organism database for Dictyostelium
discoideum, includes the complete genome sequence and expression data for this …
discoideum, includes the complete genome sequence and expression data for this …
Development of anti-PD-L1 antibody based on structure prediction of AlphaFold2
K Du, H Huang - Frontiers in Immunology, 2023 - frontiersin.org
Accurate structural information plays a crucial role in comprehending biological processes
and designing drugs. Indeed, the remarkable precision of the AlphaFold2 has facilitated …
and designing drugs. Indeed, the remarkable precision of the AlphaFold2 has facilitated …
Better together: Elements of successful scientific software development in a distributed collaborative community
J Koehler Leman, BD Weitzner… - PLoS computational …, 2020 - journals.plos.org
Many scientific disciplines rely on computational methods for data analysis, model
generation, and prediction. Implementing these methods is often accomplished by …
generation, and prediction. Implementing these methods is often accomplished by …
Oral microbiome and cancer therapy-induced oral mucositis
JLC Mougeot, CB Stevens, DS Morton… - JNCI …, 2019 - academic.oup.com
Abstract Characterization of the role of oral microbiome in cancer therapy-induced oral
mucositis (CTOM) is critical in preventing the clinically deleterious effects on patients' health …
mucositis (CTOM) is critical in preventing the clinically deleterious effects on patients' health …
Classification of protein structure classes on flexible neutral tree
W Bao, D Wang, Y Chen - IEEE/ACM transactions on …, 2016 - ieeexplore.ieee.org
Accurate classification on protein structural is playing an important role in Bioinformatics. An
increase in evidence demonstrates that a variety of classification methods have been …
increase in evidence demonstrates that a variety of classification methods have been …