[HTML][HTML] Hybrid methods for combined experimental and computational determination of protein structure
Knowledge of protein structure is paramount to the understanding of biological function,
develo** new therapeutics, and making detailed mechanistic hypotheses. Therefore …
develo** new therapeutics, and making detailed mechanistic hypotheses. Therefore …
Finding the needle in the haystack: towards solving the protein-folding problem computationally
B Li, M Fooksa, S Heinze, J Meiler - Critical reviews in biochemistry …, 2018 - Taylor & Francis
Prediction of protein tertiary structures from amino acid sequence and understanding the
mechanisms of how proteins fold, collectively known as “the protein folding problem,” has …
mechanisms of how proteins fold, collectively known as “the protein folding problem,” has …
Predicting protein complex structure from surface-induced dissociation mass spectrometry data
Recently, mass spectrometry (MS) has become a viable method for elucidation of protein
structure. Surface-induced dissociation (SID), colliding multiply charged protein complexes …
structure. Surface-induced dissociation (SID), colliding multiply charged protein complexes …
Federating structural models and data: outcomes from a workshop on archiving integrative structures
Structures of biomolecular systems are increasingly computed by integrative modeling. In
this approach, a structural model is constructed by combining information from multiple …
this approach, a structural model is constructed by combining information from multiple …
Protonation-dependent conformational dynamics of the multidrug transporter EmrE
The small multidrug transporter from Escherichia coli, EmrE, couples the energetically uphill
extrusion of hydrophobic cations out of the cell to the transport of two protons down their …
extrusion of hydrophobic cations out of the cell to the transport of two protons down their …
Rosetta protein structure prediction from hydroxyl radical protein footprinting mass spectrometry data
In recent years mass spectrometry-based covalent labeling techniques such as hydroxyl
radical footprinting (HRF) have emerged as valuable structural biology techniques, yielding …
radical footprinting (HRF) have emerged as valuable structural biology techniques, yielding …
Modeling of Cu (ii)-based protein spin labels using rotamer libraries
Z Hasanbasri, MH Tessmer, S Stoll… - Physical Chemistry …, 2024 - pubs.rsc.org
The bifunctional spin label double-histidine copper-(II) capped with nitrilotriacetate [dHis-Cu
(II)-NTA], used in conjunction with electron paramagnetic resonance (EPR) methods can …
(II)-NTA], used in conjunction with electron paramagnetic resonance (EPR) methods can …
Rapid simulation of unprocessed DEER decay data for protein fold prediction
Despite advances in sampling and scoring strategies, Monte Carlo modeling methods still
struggle to accurately predict de novo the structures of large proteins, membrane proteins, or …
struggle to accurately predict de novo the structures of large proteins, membrane proteins, or …
Protein structure prediction guided by crosslinking restraints–A systematic evaluation of the impact of the crosslinking spacer length
Recent development of high-resolution mass spectrometry (MS) instruments enables
chemical crosslinking (XL) to become a high-throughput method for obtaining structural …
chemical crosslinking (XL) to become a high-throughput method for obtaining structural …
Iterative molecular dynamics–Rosetta membrane protein structure refinement guided by Cryo-EM densities
SP Leelananda, S Lindert - Journal of chemical theory and …, 2017 - ACS Publications
Knowing atomistic details of proteins is essential not only for the understanding of protein
function but also for the development of drugs. Experimental methods such as X-ray …
function but also for the development of drugs. Experimental methods such as X-ray …