DNA supercoiling is a fundamental regulatory principle in the control of bacterial gene expression

CJ Dorman, MJ Dorman - Biophysical reviews, 2016 - Springer
Although it has become routine to consider DNA in terms of its role as a carrier of genetic
information, it is also an important contributor to the control of gene expression. This …

DNA packaging by molecular motors: from bacteriophage to human chromosomes

B Prevo, WC Earnshaw - Nature Reviews Genetics, 2024 - nature.com
Dense packaging of genomic DNA is crucial for organismal survival, as DNA length always
far exceeds the dimensions of the cells that contain it. Organisms, therefore, use …

Multiscale structuring of the E. coli chromosome by nucleoid-associated and condensin proteins

VS Lioy, A Cournac, M Marbouty, S Duigou… - Cell, 2018 - cell.com
As in eukaryotes, bacterial genomes are not randomly folded. Bacterial genetic information
is generally carried on a circular chromosome with a single origin of replication from which …

ATP-driven separation of liquid phase condensates in bacteria

B Guilhas, JC Walter, J Rech, G David, NO Walliser… - Molecular Cell, 2020 - cell.com
Liquid-liquid phase-separated (LLPS) states are key to compartmentalizing components in
the absence of membranes; however, it is unclear whether LLPS condensates are actively …

Architecture of the Escherichia coli nucleoid

SC Verma, Z Qian, SL Adhya - PLoS genetics, 2019 - journals.plos.org
How genomes are organized within cells and how the 3D architecture of a genome
influences cellular functions are significant questions in biology. A bacterial genomic DNA …

Mechanistic and Structural Basis for the Actions of the Antibacterial Gepotidacin against Staphylococcus aureus Gyrase

EG Gibson, B Bax, PF Chan, N Osheroff - ACS infectious diseases, 2019 - ACS Publications
Gepotidacin is a first-in-class triazaacenaphthylene novel bacterial topoisomerase inhibitor
(NBTI). The compound has successfully completed phase II trials for the treatment of acute …

Organization of the Escherichia coli chromosome by a MukBEF axial core

J Mäkelä, DJ Sherratt - Molecular cell, 2020 - cell.com
Structural maintenance of chromosomes (SMC) complexes organize chromosomes
ubiquitously, thereby contributing to their faithful segregation. We demonstrate that under …

The MksG nuclease is the executing part of the bacterial plasmid defense system MksBEFG

M Weiß, G Giacomelli, MB Assaya… - Nucleic Acids …, 2023 - academic.oup.com
Cells are continuously facing the risk of taking up foreign DNA that can compromise
genomic integrity. Therefore, bacteria are in a constant arms race with mobile genetic …

Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins

M Stracy, J Schweizer, DJ Sherratt, AN Kapanidis… - Molecular cell, 2021 - cell.com
Despite their diverse biochemical characteristics and functions, all DNA-binding proteins
share the ability to accurately locate their target sites among the vast excess of non-target …

Multiscale dynamic structuring of bacterial chromosomes

VS Lioy, I Junier, F Boccard - Annual review of microbiology, 2021 - annualreviews.org
Since the nucleoid was isolated from bacteria in the 1970s, two fundamental questions
emerged and are still in the spotlight: how bacteria organize their chromosomes to fit inside …